Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152289g00003 ATGCAACGTTGTGCTGCATCAGGACAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTCGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGTGTGATAGTCAACAGGTACTTTGGATATCTGATGGCGGTCTTCCTGATTTAGGTGGCATTAATGATGAAGAGACCTGTTTTCTTGACGAGGTCCACCAACCTGTTCTTACCTATCCTGGAGCTTACAGAAAAGTTACTGTGGAGTTAAAGATACACCACCTAGCTGTGGATGCCCTTTTAAAAAGCTACCAGCGGTGCCTTGCAGATGCAGTTACATCTCAAAACACATATGCGGATGCAATATTGCAACATCTGTATCGATGGCTTTGCAGCCCTCAGTCAAAACTTCATGATCCAGCTCTTCACCAGCTTCTTCAGAAGGTCATGCAAAAAGTCTTTGCACTGTTGTTGGGAGAGTTCCGCAAGTTGGGTGCAACAATTGTGTTTGCGAACTTCTCAAAGATTATCATAGACACGGGGAAATATGATCTGGATGCAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAGTCCAGGGACTTGCTTGAATTGATTGAATTGGAACCACTTCAGTTTTGGCGGTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATCTGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAGTACTTGCCAAAGAAAATCCAGGATCATTTCATTGTCATTGTTTCTCAATTCTTGTATATTCCTTGGAGCTATGCACAAAAGCAAGCAGGAAACAGAGCATCAATGCTGAATGGTGACTCCTGTACCCCATCAATTAACATTGGAGCTGCAGAGGTTTTGGAGTCAGAAATGATAGAATATATCAAAGGGCAGATCAGCTCTTACTTCACAGACAGTCTTTTGCGAATTGTTCGTGATATTGTTGTTCACATGAAAGGGGCGAGCAGATCAGAAGACGACCCAAATTCATCATCTGGCCTTCCTCAAATTGAGGGTGATCCCCATGGAGGGGATGCATCCTTGGAATTTATCAAGCATGTCTGTGCTGTGTTGGCCCTCGACCAAAGCGTGCAGCATGGTGTTTTGGTCATGAGAAAGAATTTGTTAAAATATGTTCGTGTTAGGGAGTTTGCTCCCGAAGCTGAGTTTCGTGATCCATGCCATTCCTTCATCCTATCCAATGTCATTTGCAGCTATTGTAATGACTGCAGAGATTTGGATTTGTGCCGTGACTCGGGTTTATTGAGTCAGGAGTGGCGTTGTGGTGTGGCGCAGTGTGGGCAGCCATATGACAGGGAGGTGATGGAGAATACTCTTGTTCAGATAGCACGCCAAAGAGAGCGGCTATACCACCTTAATGATCTGGTGTGCCTCAGGTGCAATCAAGTCAAAGCTGCACATTTGTCTGAGCAATGTGCATGTGCTGGCTCATTCAGGTGCAAGGAAGACGTAACTGAATTTCGCTCAAAGATGCAGGTTTTCTTCAATATAGCTTTGCGTCATAAATTCCAACTTCTCCAGGAATGTACTTCTTGGATTTTAGAAATTAGATTGTAA 1635 0.4312 MQRCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALCDSQQVLWISDGGLPDLGGINDEETCFLDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSYQRCLADAVTSQNTYADAILQHLYRWLCSPQSKLHDPALHQLLQKVMQKVFALLLGEFRKLGATIVFANFSKIIIDTGKYDLDAAKAYCDSLLRTIQSRDLLELIELEPLQFWRSLLFMDQYNYGGIPAKSDESQVDIISSWNIAEYLPKKIQDHFIVIVSQFLYIPWSYAQKQAGNRASMLNGDSCTPSINIGAAEVLESEMIEYIKGQISSYFTDSLLRIVRDIVVHMKGASRSEDDPNSSSGLPQIEGDPHGGDASLEFIKHVCAVLALDQSVQHGVLVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSGLLSQEWRCGVAQCGQPYDREVMENTLVQIARQRERLYHLNDLVCLRCNQVKAAHLSEQCACAGSFRCKEDVTEFRSKMQVFFNIALRHKFQLLQECTSWILEIRL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152289g00003 544 SMART DUF1744_2 1 234 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Stsc152289g00003 544 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 109 541 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Stsc152289g00003 544 Pfam Domain of unknown function (DUF1744) 110 234 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Stsc152289g00003 544 Pfam Domain of unknown function (DUF1744) 2 107 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152289g00003 Stsc-Chr152289 9427 14667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152289g00003 3 540 Core DNA Replication Machinery Family AT2G27120 51.795 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152289g00003 K02324 - qsa:O6P43_028503 874.774