Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152277g00004 ATGTCTAAAGAATATGAGGATGAGAAGGAGAGGAGTAGTGAAGGAGAAGATTTATTAGATGAGGAAAGTTCTTCATTGGGATGTTGTTCCAACCAGAAATGCTCTTCATTTGATTTGAATGAAGAAGCAATCAGTGAAGAAGAAGGTAATAAGAACGAGGATGAGGCATGTGAAGAAGAGGAGATGATGAATGAGAATAGAACATCAAATTCAAGAGAAGAAGATGAAAGAAATAATGATAATAACAACAATGAGAGAAGAGGTGGAGTTAGGCAATATGTTAGATCGAAGATGCCAAGGCTTCGATGGACTCCTGAGCTTCATCTCTCCTTTGTTCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACTCCCAAGTTGGTGCTTCAGCTGATGAATGTGAGAGGCCTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTTTCGTAGCAAGAAACTTGACGAGGCCGGGCAAGTATTAGGTCAAACACAGAGATGGAGGCAAGAAGGAGTAGGACGTAGTAGAAGTCATCATGAGATGCTGAATCATCCTCATCAACATTTCAAGATGGGAAACGGTGGCATTATTCTAGCAACCAATTTCAACCATCATTTCCAAGACAACCCTCACTTCTCCCTTTCATCACGTTCACATGCAAACCCCACCCACACAGGGCAACATCAATTGTATTTGAATCATCAAGGATTGAGAGTACCAAGCTATGCAACCAGCAATGAAATTGTGTCCTCAAGTAATCATCAAGTTCAAGTAGCCATGGATACGTCTTGCAGAATTGCACCAATTAGACCAAGTCATTTCCTTGAAGAGAAGAAGTGGCCTCCCTTGGAAATTATGAACAATCATCATCATCAATGGAAGTTCAAGAGTACTCATGAACCTCTTCATCAGCCAAGTATGAGAGAGTATCTATCACCCTCCAAGCTAGAATTTGATCCTCCATTTCGGATAAAGTTGAATGAAGAGAAAAGGGAGAAATTAGAGGCGGAAGGGTTGCCTGATTTGCAACTAGGTTTGAGTCACGGCAGAGATGGAAGTGATGATGATGATTGCAGAGAAACACATGAGATCAGCACTAAGCTTTCACTTTCATAG 1119 0.4138 MSKEYEDEKERSSEGEDLLDEESSSLGCCSNQKCSSFDLNEEAISEEEGNKNEDEACEEEEMMNENRTSNSREEDERNNDNNNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMFRSKKLDEAGQVLGQTQRWRQEGVGRSRSHHEMLNHPHQHFKMGNGGIILATNFNHHFQDNPHFSLSSRSHANPTHTGQHQLYLNHQGLRVPSYATSNEIVSSSNHQVQVAMDTSCRIAPIRPSHFLEEKKWPPLEIMNNHHHQWKFKSTHEPLHQPSMREYLSPSKLEFDPPFRIKLNEEKREKLEAEGLPDLQLGLSHGRDGSDDDDCRETHEISTKLSLS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152277g00004 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 155 IPR017930 -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 62 84 - -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 24 39 - -
Stsc152277g00004 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 154 IPR006447 GO:0003677
Stsc152277g00004 372 SUPERFAMILY Homeodomain-like 97 153 IPR009057 -
Stsc152277g00004 372 Gene3D - 98 155 - -
Stsc152277g00004 372 FunFam Myb family transcription factor 97 155 - -
Stsc152277g00004 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 75 201 IPR046955 GO:0003700
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 349 365 - -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 335 372 - -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 41 61 - -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 1 18 - -
Stsc152277g00004 372 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Stsc152277g00004 372 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152277g00004 Stsc-Chr152277 14042 16667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152277g00004 90 160 G2-like Transcription Factor Family AT2G42660 76.056 4.83e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc152277g00004 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152277g00004 - - adu:107468251 472.626