Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152271g00003 ATGGGAATATATGATCCATTCCATCAAGTGAGCATGTGGGGTGACAGCTTCAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTAATGGTGAACGCAAACACGGAGGAAAGTAAGCCTGAATTTGTTCCTAATGAATCAAGGGAACCTTCTGGAGATGATCAAGATACTACTGATAAAGATGATAGCAAGATGCATCGACGACTGGCACAAAATCGCGAGGCTGCACGGAAAAGCAGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGAGAAAGCAAGAAAACATGGTCTATATGTAGGCAGTGCATTAGATGACGGTTATATTGGCTCTCCGGGAACAATGACCTCAGGGATAGCAGTCTTTGAGATTGAATACGGACACTGGGTTGAACAGCAGCATAGACAGAACCAAGAACTCAGAAATGCATTGCACAGTCATGCATCTGATATAGAGCTTCATCTACTTGTTGAGAGTTACTTAAATCATTATGCAAATCTTTTCCAGATGAAAGCAGAAGTTGCAAAGATTGATGTGTTTTATTTGATCTCTGGTGTGTGGAAAGCATCGGTCGAACGCCTTTTCCTTTGGATCGGAGGATCCCGCCCATCACAGCTTCTAAAGATCATTGTGCCACAACTCGAGCCTTTGACCGATCAACAAATCGCGAGTATTAACAACCTCCAGCTATCATCGCACCAAGCAGAAGATGCACTTTCACTTGGATTGGAGAAGCTACAGCAGGGTCTAGTCCACAGCATAGCAGTTGATCCATTGCTTATAGGAAACTATGGATTTCAGATGGCTGCTGCCCTTGACAATATTGAGGCTCTAGAAGGTTTTGTGAGCCAGGCAGATCACCTCAGGCAACAAACTCTGCTACACATGTCTCGAATCCTGACGACCGGCCAAGCAGCTCGAGGCTTGCTGATAATGGGAGAATACTTGCAGCGCCTTCGCACTCTTAGCTCTTTATGGTCATCTCGTCCTTGTGATCCTTGCTAG 1053 0.4492 MGIYDPFHQVSMWGDSFKVDGSLNSIASPMLMVNANTEESKPEFVPNESREPSGDDQDTTDKDDSKMHRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIEKARKHGLYVGSALDDGYIGSPGTMTSGIAVFEIEYGHWVEQQHRQNQELRNALHSHASDIELHLLVESYLNHYANLFQMKAEVAKIDVFYLISGVWKASVERLFLWIGGSRPSQLLKIIVPQLEPLTDQQIASINNLQLSSHQAEDALSLGLEKLQQGLVHSIAVDPLLIGNYGFQMAAALDNIEALEGFVSQADHLRQQTLLHMSRILTTGQAARGLLIMGEYLQRLRTLSSLWSSRPCDPC 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152271g00003 350 MobiDBLite consensus disorder prediction 37 68 - -
Stsc152271g00003 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Stsc152271g00003 350 Pfam bZIP transcription factor 66 95 IPR004827 GO:0003700|GO:0006355
Stsc152271g00003 350 MobiDBLite consensus disorder prediction 43 68 - -
Stsc152271g00003 350 SUPERFAMILY Leucine zipper domain 66 99 IPR046347 GO:0003700|GO:0006355
Stsc152271g00003 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 99 IPR004827 GO:0003700|GO:0006355
Stsc152271g00003 350 SMART brlzneu 62 122 IPR004827 GO:0003700|GO:0006355
Stsc152271g00003 350 ProSiteProfiles DOG1 domain profile. 135 345 IPR025422 GO:0006351|GO:0043565
Stsc152271g00003 350 PANTHER TRANSCRIPTION FACTOR TGA9 1 347 - -
Stsc152271g00003 350 FunFam BZIP family transcription factor 65 114 - -
Stsc152271g00003 350 Gene3D - 65 113 - -
Stsc152271g00003 350 Coils Coil 85 112 - -
Stsc152271g00003 350 Pfam Seed dormancy control 153 227 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152271g00003 Stsc-Chr152271 4741 9824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152271g00003 1 350 Calmodulin-binding Proteins AT1G77920 56.198 1.07e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc152271g00003 DOG1 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152271g00003 K14431 - gmx:100775882 512.686