Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152269g00001 TATATCGATTATCTATTTCTTGGAGATTATGTTGATAGGGGCCAACACAGCTTGGAAACTATAACCCTTCTGCTTGCTCTGAAGGTTGAGTATCCTAGCAATGTACATTTGATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGGATTGAGTGCATTGAGCGAATGGGTGAGAGAGATGGTATTTGGGCATGGCATCGGATAAACCGTCTGTTTAATTGGCTTCCTCTGGCTGCTCTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCATTTGGAACAGATTCAAAATATTCAGCGTCCAATTACGATGGAGGCAGGCTCAATTGTACTTATGGATCTGTTGTGGTCCGATCCTACAGAGAATGACAGCGTGGAAGGGCTGCGGCCAAATGCTAGAGGTCCGGGTTTGGTTACTTTTGGGCCGGACCGGGTCATGGAATTTTGCAACAACAATGATCTTCAACTAATTGTTCGAGCGCATGAATGTGTTATGGATGGCTTTGAGCGTTTTGCCCAGGGGCATTTGATCACACTTTTCTCAGCTACAAACTACTGTGGTACTGCAAATAATGCCGGGGCAATTTTAGTTTTGGGTAGAGATCTTGTGGTGGTTCCCAAACTGATCCACCCATTACCACCTGCAATTTCTTCACCTGAAACATCACCAGAGCGTCATATTGAAGACACGTGGATGCAGGAATTGAATGCCAACAGACCACCGACACCAACTAGAGGCCGTCCTCAAGTAACAAATGACCGGGGTTCTCTTGCTTGGATATAG 819 0.442 YIDYLFLGDYVDRGQHSLETITLLLALKVEYPSNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIQNIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152269g00001 272 MobiDBLite consensus disorder prediction 248 263 - -
Stsc152269g00001 272 SMART pp2a_7 2 225 IPR006186 GO:0016787
Stsc152269g00001 272 FunFam Serine/threonine-protein phosphatase 1 245 - -
Stsc152269g00001 272 SUPERFAMILY Metallo-dependent phosphatases 4 232 IPR029052 -
Stsc152269g00001 272 MobiDBLite consensus disorder prediction 248 272 - -
Stsc152269g00001 272 Pfam Calcineurin-like phosphoesterase 4 176 IPR004843 GO:0016787
Stsc152269g00001 272 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 272 - -
Stsc152269g00001 272 ProSitePatterns Serine/threonine specific protein phosphatases signature. 38 43 IPR006186 GO:0016787
Stsc152269g00001 272 Gene3D - 2 248 IPR029052 -
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 4 31 IPR006186 GO:0016787
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 105 132 IPR006186 GO:0016787
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 165 185 IPR006186 GO:0016787
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 37 61 IPR006186 GO:0016787
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 75 101 IPR006186 GO:0016787
Stsc152269g00001 272 PRINTS Serine/threonine phosphatase family signature 187 203 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152269g00001 Stsc-Chr152269 17 2515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152269g00001 4 171 Calmodulin-binding Proteins AT5G63870 31.156 4.24e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152269g00001 - - mnt:21399334 560.451