Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152261g00002 ATGGAGTGTCATAGAACCACATACCAGTTGGTTGTGATAGTGTTTTATGGTGTTGATCCCTCTGAGCTACGTAATCTGAGAGGGATGATTGCAGAAGCTTTTAATGATCTTTTGAGTGGGATAAAAGTGGAGGAAGACAGCACTAGCAGAAATTGGTTCCATAAAAGGGCCAGTCATAGTAATAAATTCCAGAAAATTGTTGAAGATGTTACTGCTATGCTAGACAGGATAGATTTATTCATTGCTGAGCATCCTGTTGTAGTAGAGTCTCGTGTTGAGGATGTAATTCAAGTACTATATAACCATGAAGCAAAAGATATTCTGTCTTTGGGGATATGGGGAATGGGAGGTATGAGTAATACAACGATTGCCAAAGCCATCTATAATAAAATTGGCCACAAATTTCAAGGTAGAAGCTTCCTCCTAAATATCAGGGAAGAGTGGAAAAAAACTAATGGCCCGGTTTCTCTTCGAAATAAGCTTCTCACTCATATCTTCAACACAACCAAAATAAGGATACATAATATTGAAGAGGGAAAGCTTAAACTGAAGGAAAGGCTTTGCCAAAAACCTATACTTCTTGTGCTTGATGATGTGGATAAACCGGAGCAACTGAAAGCATTGTGTGGAAGTTATGAATGGTTCAGAGCAGGGAGCAGAATAATCATCACAACAAGAGATAAGAAGTTGGCTAGAATCAGGATAAAGAAAGAGGATTTGGCTAGAGTTGGCTCGGAAATTTATACACTGAAACAAATGGATGAGAAAGATTCTATTGAACTCTTCAGTTGGCATGCATTCAATGAAGCAAGTCCTTCTGAAGAATTTCATGAACTTTCTGGAAAGATAGTTTCATATTGTGGGGGTTGCCACTGGCTCTTGAAGTCCTGGGGAATGGACCGAAAAGATGTAATACAGATATTAGATGGTTGTGGACTTCTTGCAGAAACTGGATTAAATGTCCTTGTAGAGAGGAGCCTTGTAGTTGTTGACAACAACAACAGACTTGGAATGCATGATTTGTTACGCGACATGGGAAGAGAAATTATTCGTGAGAAAATGCCAAAAGATCCTGGAATGCATAGTAGGTTATGGAACCCGGAAGATGCATTTCAGTTTCCAATGGGATATCCAAATATTGAAGGGTTGGCATTGAAATTATCAAGAACCGAAAAAGTTGAAACAAAGGCATTTGAGAAGATTATCAAACTCAGATTGCTTCAACTTACTGGCGTGGAACCTGTTGGGAATTTCAATATGCTTCAAGAGATCTCAGATGGCTATCTTGGCAGGAATTTCCTTTCAGCAACACCCCTAAAGAGTGTTATCAAGGAAATCTAG 1341 0.39 MECHRTTYQLVVIVFYGVDPSELRNLRGMIAEAFNDLLSGIKVEEDSTSRNWFHKRASHSNKFQKIVEDVTAMLDRIDLFIAEHPVVVESRVEDVIQVLYNHEAKDILSLGIWGMGGMSNTTIAKAIYNKIGHKFQGRSFLLNIREEWKKTNGPVSLRNKLLTHIFNTTKIRIHNIEEGKLKLKERLCQKPILLVLDDVDKPEQLKALCGSYEWFRAGSRIIITTRDKKLARIRIKKEDLARVGSEIYTLKQMDEKDSIELFSWHAFNEASPSEEFHELSGKIVSYCGGCHWLLKSWGMDRKDVIQILDGCGLLAETGLNVLVERSLVVVDNNNRLGMHDLLRDMGREIIREKMPKDPGMHSRLWNPEDAFQFPMGYPNIEGLALKLSRTEKVETKAFEKIIKLRLLQLTGVEPVGNFNMLQEISDGYLGRNFLSATPLKSVIKEI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152261g00002 446 PRINTS Disease resistance protein signature 399 415 - -
Stsc152261g00002 446 PRINTS Disease resistance protein signature 186 200 - -
Stsc152261g00002 446 PRINTS Disease resistance protein signature 109 124 - -
Stsc152261g00002 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 298 IPR027417 -
Stsc152261g00002 446 Pfam NB-ARC domain 89 290 IPR002182 GO:0043531
Stsc152261g00002 446 Gene3D - 81 239 IPR027417 -
Stsc152261g00002 446 Gene3D - 1 80 IPR035897 -
Stsc152261g00002 446 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 306 409 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152261g00002 Stsc-Chr152261 10207 12061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152261g00002 96 418 WRKY Transcription Factor Family AT5G45050 26.420 2.64e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152261g00002 - - lja:Lj0g3v0331109.1 390.193