Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152256g00005 ATGTGGTTTCTTAAACTCAAATCATTTCACTACTACCTTTGCTGCCTTCTCAATCTCATCACCACCTTCAATTTGATCCTAACCGAAGCCAGTAATAATCACAGTGAGCTAGAATACCTGAAATACGATTGTTTAAACAACACAACCATCTCTTCCAATCCCACTACCATCTACAAATCCAACCTCCAAACCCTTCTTACCTCCCTCTCTTCCCAAGCAGCCACCGCCGGCTTCTACAACGCCACCGCCAGCGCCGGCCAACTGAACGAAACAATCTATGGCATGTACATGTGCCGCGGTGACGTCAGCAACCAGACATGCCAAGAGTGCGTAGAAACAGCAAAGCAGCAAATAGGGTCAAGGTGTGGCAACAACTCGAAAGAGGGGATAATTTGGTACCACCAATGCTTCCTTCGCTATTCGAATCGTTCGTTCTTCTCTACCATGGATGAATGGCCTCGCCTTGAGTACATAGTCCACAACAATGGCAGCAGCAACTCAAGCATAGAAGGTCAAGGAAGCTACGGGTGGTTGTTGGCGAGCACGTTGAACGATGCAATTGATGAGGCTAAGAGCAAGACCAAGAAATTTGCGACAAAACACGCGAACTTGAATGGGTCTAAGAATGTGTATACGCTTGTTCAGTGCACTCCGGATCTGTCTAGAGAAGATTGCAGTAAGTGTTTGAATGATTTAATGAAGGATATTCCAATGTGCTGCCTGGGAACCGATGGTGGGATGGTTCTGTGTCCAAGTTGCAATCTCATGTTCGGGTTACGCAAATTTTACTCCGACGCTATTCGTCCTAGGACCTGGAACCCACAACCTAATTCTAGACTTGGTAGTATACATGAAACCAAGCCTTCAGGGGAACCAAGAGCCAGAAGATTAAAGATTATTGCGGCTCTTATGCTGCTATTGATACTCGCGTCTTTTTGTATAGTTGGAAACGAAAGTACTACTTTGGAGTCATTGCAATTTGACTTAGCTACGATTCAAGAAGCAACAAACAATTTTTCTTGTGCAAACTTGATAGGCAAAGGTGGATTCGGAGAAGTTTACAAGGGTGTTCTTTCTGATGGACGAGAAATAGCTGTGAAAAGATTGTCAATAACTTCTGAGCAAGGCATTGCAGAATTTAAGAATGAAGTTTTGCTAATAGCTAAACTTCAACACAGAAATCTTGTTGCATTATTGGGATTTTGCTTACAAGAAGGAGAGAAAATACTTATTTATGAATTTGTTCCTAACAAGAGCCTAGACTATTTTTTATTCGGTTCTGAAGAGCAAATATTTTTAAACTGGTGCGAGAAATTTAAAATTATAGGCGGAATTGCTAGTGCAATTCTCTATTTACATGAATATTCTCGTCTCAAAATTATACATCGTGATATTAAACCTAATAATGTTTTATTAGATGTCAATATGAATCCTAAAATTTCAGATTTTGGTTTGGCAAGAATGGTTGCTATTGATCAAGATCAAGGACGAACAAATAGAATTGTCGGAACCTAG 1515 0.4106 MWFLKLKSFHYYLCCLLNLITTFNLILTEASNNHSELEYLKYDCLNNTTISSNPTTIYKSNLQTLLTSLSSQAATAGFYNATASAGQLNETIYGMYMCRGDVSNQTCQECVETAKQQIGSRCGNNSKEGIIWYHQCFLRYSNRSFFSTMDEWPRLEYIVHNNGSSNSSIEGQGSYGWLLASTLNDAIDEAKSKTKKFATKHANLNGSKNVYTLVQCTPDLSREDCSKCLNDLMKDIPMCCLGTDGGMVLCPSCNLMFGLRKFYSDAIRPRTWNPQPNSRLGSIHETKPSGEPRARRLKIIAALMLLLILASFCIVGNESTTLESLQFDLATIQEATNNFSCANLIGKGGFGEVYKGVLSDGREIAVKRLSITSEQGIAEFKNEVLLIAKLQHRNLVALLGFCLQEGEKILIYEFVPNKSLDYFLFGSEEQIFLNWCEKFKIIGGIASAILYLHEYSRLKIIHRDIKPNNVLLDVNMNPKISDFGLARMVAIDQDQGRTNRIVGT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152256g00005 504 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 504 - -
Stsc152256g00005 504 Gene3D Transferase(Phosphotransferase) domain 1 415 504 - -
Stsc152256g00005 504 ProSiteProfiles Gnk2-homologous domain profile. 39 145 IPR002902 -
Stsc152256g00005 504 Pfam Salt stress response/antifungal 172 257 IPR002902 -
Stsc152256g00005 504 Pfam Salt stress response/antifungal 44 142 IPR002902 -
Stsc152256g00005 504 SMART serkin_6 339 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152256g00005 504 Pfam Protein kinase domain 343 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152256g00005 504 FunFam Cysteine-rich receptor-like protein kinase 25 157 262 - -
Stsc152256g00005 504 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 309 414 - -
Stsc152256g00005 504 Gene3D Phosphorylase Kinase; domain 1 311 414 - -
Stsc152256g00005 504 ProSiteProfiles Gnk2-homologous domain profile. 157 262 IPR002902 -
Stsc152256g00005 504 Gene3D - 37 145 IPR038408 -
Stsc152256g00005 504 Gene3D - 157 262 IPR038408 -
Stsc152256g00005 504 FunFam Os07g0541700 protein 415 504 - -
Stsc152256g00005 504 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Stsc152256g00005 504 ProSiteProfiles Protein kinase domain profile. 339 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152256g00005 504 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 37 145 - -
Stsc152256g00005 504 SUPERFAMILY Protein kinase-like (PK-like) 322 504 IPR011009 -
Stsc152256g00005 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152256g00005 Stsc-Chr152256 6664 8902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152256g00005 35 504 Receptor kinase-like Gene Family AT4G05200 43.145 4.57e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc152256g00005 Pkinase 2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152256g00005 - - aip:110262495 781.941