LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc152256g00004	ATGTCTCCAGAGTATGCTATGTTTGGAAAATATTCTGAAAAGTCTGACATCTTCAGTTTTGGAGTTATGATTTTGGAAATTGTTAGTGGCAAAAAGAATTCAAGTTCTTATGACTACTCTTACTCCAGCGATGGTCTCTTGAGCCATGCTTGGAAGCAATGGAGAGATGGGACACCATTTCAAATATTGGACCCAAATCTACATGAATCGTGTTCTCAAATGGAAGTGATTAGATGCATCCAAGTTGGTTTACTGTGTGTTCAAGAAAATCCTAGTGATAGGCCACAAATGGCAGAAGTAGTTTCATATCTAAGTAACCTCTCCATTGAGTTGCTATCACCTCACGAGCCTGCCTTTTTTGTTCATGGTAGAATGAATCCAAATATGGTCGCAATGGAAGAAGATTCAGGGCACCTAAGCAATAGTTCCACTCAACATTCACTCAACGAAATGTCTATTAGTATATCTGTTCCACGATAA	480	0.3875	MSPEYAMFGKYSEKSDIFSFGVMILEIVSGKKNSSSYDYSYSSDGLLSHAWKQWRDGTPFQILDPNLHESCSQMEVIRCIQVGLLCVQENPSDRPQMAEVVSYLSNLSIELLSPHEPAFFVHGRMNPNMVAMEEDSGHLSNSSTQHSLNEMSISISVPR	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc152256g00004	159	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	1	156	-	-
	Stsc152256g00004	159	Pfam	Protein tyrosine and serine/threonine kinase	1	104	IPR001245	GO:0004672\|GO:0006468
	Stsc152256g00004	159	SUPERFAMILY	Protein kinase-like (PK-like)	1	130	IPR011009	-
	Stsc152256g00004	159	Gene3D	Transferase(Phosphotransferase) domain 1	1	114	-	-
	Stsc152256g00004	159	ProSiteProfiles	Protein kinase domain profile.	1	119	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc152256g00004	159	MobiDBLite	consensus disorder prediction	135	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc152256g00004	Stsc-Chr152256	5516	6308	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc152256g00004	1	159	Receptor kinase-like Gene Family	AT4G11480	44.654	8.55e-45	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc152256g00004		PK_Tyr_Ser-Thr	1.8e-08	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc152256g00004	-		-	aip:110262495	271.166