Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152256g00002 ATGTTCCAGACCAAAAATATCACACTTCCATTCCTACTCAGAACTCTAACACTAACACTAACAGTGCTCTTGACTTCAGAACATGCCTCAGCTTCTGTTTTCGATTCAGTCAACTGCACAACCAACGCCACCTTCACTCCAAACACCACTTTCCACGTCAACCTCAACACCCTCCTCTCATATCTTACCTCCAATGTCACCAACCGCAACAACCTCAGGTTCTTCAACGCAACTGCAGGCTCTCACGGTCCAGACGCCGCCGTCTACGGCCTCTTCATGTGCCGCGGTGACGTGCCACTTCCTCTCTGCCGAGAGTGCGTTGGTTTCGCAGCGGAGAACATCGTCTCTTCTTGTCCCTCTGCTAAAGAAGCTGTCATCTGGTACAACGAGTGCCTGTTACGCTACTCCAACAGATTCTTCTTCTCCACCATGGACGAATGGCCAAGGTACCAGATCAAGATTCCGTTGGGGGACCCTGTTGTTTTGCACAGCAAAGGCTTCTACAATGCTTTAGGGTCCATATTCAATGGGATTGGAAATGAAGCAGCCTTGGCTCTAGAAGCTTCTGATAACCAGTATGCAGTCAAGCAAGCCGCCGCCACTGCCGCCACTACAGTGTACGGTCTTGCACAGTGCACGCCGTACCTCTCAGCCGCCGACTGCCGGAGATGTATCGTGGATGCGGCGGCTGAGTTTCCCAGGACTTGCTGCGGAGGAAGCATAGGGGGAAGTGTTATGTTTCCCAGTTGCATAGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCTGGTACCTCCGAGACATTAACAACCTCAACTAACAAGGGAGGAAGAAATAGCAGAGCAGAAGTGATTGCGATTGTTGTAGTTGGGGTTGTGATTTTGGTGATGCTTTTGTGCATTGGCTACTTTTACCTTCGAAGAAAACTGAGGAAGAGACGCAAGGCCGGTCTCAGAATCAGAAAAAACTTAGGGCCTGATATGACTGCCTCGGAGTCCTTGCAATTTGATTTGGCTACAATTCAATTTGCAACTAACAATTTTTGTCAAGGGAGCAGGGTAGGCAAAGGGGGTTATGGAGAAGTCTACAAGGTGCTATATATAATACATGTAAATCCATATCAAGAGAGTATACTTATCTATGAATATGTACCTAACAAGAGCCTTGATCACTTCCTATTTGATCCCTCCAAGAGAAGAGAATTAACATGGTCGCAACGTTATCAAATCATAAAAGGAATTGTTCGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCATGATAATACATCGAGACCTCAAACCGAGCAATGTTCTACTAGATAATCACATGAATCCCAAAATTTCTGACTTTGGAATGGCGAGGATAGTAGATACAGATCATATCCAAGGGTGTACTAACAGAGTTGTGGGCACATAG 1422 0.4613 MFQTKNITLPFLLRTLTLTLTVLLTSEHASASVFDSVNCTTNATFTPNTTFHVNLNTLLSYLTSNVTNRNNLRFFNATAGSHGPDAAVYGLFMCRGDVPLPLCRECVGFAAENIVSSCPSAKEAVIWYNECLLRYSNRFFFSTMDEWPRYQIKIPLGDPVVLHSKGFYNALGSIFNGIGNEAALALEASDNQYAVKQAAATAATTVYGLAQCTPYLSAADCRRCIVDAAAEFPRTCCGGSIGGSVMFPSCIVRYETYPFYQHSGTSETLTTSTNKGGRNSRAEVIAIVVVGVVILVMLLCIGYFYLRRKLRKRRKAGLRIRKNLGPDMTASESLQFDLATIQFATNNFCQGSRVGKGGYGEVYKVLYIIHVNPYQESILIYEYVPNKSLDHFLFDPSKRRELTWSQRYQIIKGIVRGILYLHEDSRLMIIHRDLKPSNVLLDNHMNPKISDFGMARIVDTDHIQGCTNRVVGT 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152256g00002 473 Pfam Protein kinase domain 373 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152256g00002 473 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 140 - -
Stsc152256g00002 473 Gene3D Transferase(Phosphotransferase) domain 1 384 473 - -
Stsc152256g00002 473 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 365 - -
Stsc152256g00002 473 Gene3D Phosphorylase Kinase; domain 1 312 372 - -
Stsc152256g00002 473 ProSiteProfiles Gnk2-homologous domain profile. 148 259 IPR002902 -
Stsc152256g00002 473 ProSiteProfiles Protein kinase domain profile. 279 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152256g00002 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Stsc152256g00002 473 ProSiteProfiles Gnk2-homologous domain profile. 33 140 IPR002902 -
Stsc152256g00002 473 SUPERFAMILY Protein kinase-like (PK-like) 334 473 IPR011009 -
Stsc152256g00002 473 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 384 473 - -
Stsc152256g00002 473 Gene3D - 32 140 IPR038408 -
Stsc152256g00002 473 Gene3D - 161 259 IPR038408 -
Stsc152256g00002 473 Pfam Salt stress response/antifungal 167 257 IPR002902 -
Stsc152256g00002 473 Pfam Salt stress response/antifungal 39 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152256g00002 Stsc-Chr152256 2251 4519 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152256g00002 39 473 Receptor kinase-like Gene Family AT4G05200 38.956 1.08e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc152256g00002 Pkinase 1.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152256g00002 - - var:108324780 551.206