Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152248g00004 GCAAGCAAACATATGGCATATGAAGGAGATCCCAAAGTTTTCAATGGCTCCATAGAGCTCAACACACAAGACTACTATCGAGTCGGACGAGCCATTTACAGCCAGCCATTGCACATTTGGGATTCATCCACCAAGGTTCTCACAGACTTCACAACCTCTTTTACATTCACCATTCAAGGATTTGAATCCAATGGTGGTAATGTACTTGCTGATGGCTTTGTCTTCCACATGGCTCCTATTAGTTTCACAATTCCACCCAACTCAGCTGGTGGCAATTTTGGACTATTCAACAGTTCCACACTTTATGGGATACCCCAAAATCAGATTTTTATGGTGGAATTTGACACATTCCAAAATGAAGAGTATGATCCACTAGATGTTCAGCAACCTGTTGGGATCAACAAAAATTCCCTCATATCCATCAATTATACTAAGTTTGATATTGAAGAAAACAATGGGAAACAAGGTCATGCTTTAATTACCTATAATTCTTCTACCAAGAACCTTGTTGTGTCTTGGTCTTTCAGTGGAACTACTACCTATACTCTGTCTTGTGAGACTGACCTCTCTGAAGTCCTACCGGAGTACATGATAGTTGGATTCTCAGCTGGAACCGGCCGCCCCTCGACCTCACAACACAATATTCATTCTTGGGAATTCAACTCGACTCTGGATTCCACCGATTCTGAGGTAAGCAGAAAGAAGTGGCGAAAAAGGGTCATAGAAATCTTTGCAATGACTTGCTCAATAATTGTATTGGTGCTTATGGTATGTGTTTGTTGTTCATTCACAATCATCAAGAAAAGAATTCCCAAGCTCCAGCATCATGATGCCAACCACAGACACACAGTATTGGTCACCAATGACTTGGAGAAAGCATCAATACCCAGAAGATTCGAGTACAAAAAATTAGTTCTAGCAACCAATGAGTTCTCAGATGATCAAAGGCTTGGAAGTGGAGGATCTAGTCAAGTTTACAAAGGTTTTCTAAGTCATTTAGGATTTGCGGTTGCAGTGAAGAGGATTTCCACTGATATTCAAGAAGGTGAGAAAATGTTCATCAATGAGGTGAAGATAATAAGCCACCTCATACATAGAAACTTGGTGAGATTCATAGGGTGGTGTTGCCACAACAAACAAGAGTTCTTCCTGGTCTTCGAGTACATGCCTACCGCCTAG 1179 0.4114 ASKHMAYEGDPKVFNGSIELNTQDYYRVGRAIYSQPLHIWDSSTKVLTDFTTSFTFTIQGFESNGGNVLADGFVFHMAPISFTIPPNSAGGNFGLFNSSTLYGIPQNQIFMVEFDTFQNEEYDPLDVQQPVGINKNSLISINYTKFDIEENNGKQGHALITYNSSTKNLVVSWSFSGTTTYTLSCETDLSEVLPEYMIVGFSAGTGRPSTSQHNIHSWEFNSTLDSTDSEVSRKKWRKRVIEIFAMTCSIIVLVLMVCVCCSFTIIKKRIPKLQHHDANHRHTVLVTNDLEKASIPRRFEYKKLVLATNEFSDDQRLGSGGSSQVYKGFLSHLGFAVAVKRISTDIQEGEKMFINEVKIISHLIHRNLVRFIGWCCHNKQEFFLVFEYMPTA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152248g00004 392 CDD lectin_legume_LecRK_Arcelin_ConA 7 224 IPR001220 GO:0030246
Stsc152248g00004 392 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 230 IPR013320 -
Stsc152248g00004 392 Gene3D Phosphorylase Kinase; domain 1 296 388 - -
Stsc152248g00004 392 Pfam Legume lectin domain 3 230 IPR001220 GO:0030246
Stsc152248g00004 392 SUPERFAMILY Protein kinase-like (PK-like) 294 391 IPR011009 -
Stsc152248g00004 392 ProSiteProfiles Protein kinase domain profile. 311 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152248g00004 392 PANTHER - 22 391 - -
Stsc152248g00004 392 Gene3D - 1 236 - -
Stsc152248g00004 392 Pfam Protein kinase domain 312 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152248g00004 392 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152248g00004 Stsc-Chr152248 12961 14140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152248g00004 4 392 Receptor kinase-like Gene Family AT5G10530 40.750 6.01e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc152248g00004 Lectin_legB 6.3e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152248g00004 - - vra:106763732 369.392