Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152232g00001 ATGGACCCACCACCGCCACCGCCACCCACCTCCTCCAACAAGCTCCGCTTCATGTGCAGTCACGGCGGTCAGTTCCTCCCCCGTCCACGCACCAACACTCTCTTCTACGCCGGCGGCGAGACACGCATCGTCTCCTTCCACCGCCACAACCTCACCACTCTCTCCTCATTCACTTCTCACCTCTCCGCCACGCTCTCCGTCGCGCCTCCGTTCAACATCAAGTACCACCTCCCACCTCACCTCCACCTCGACTCACTCATCTCTGTCTCTTCCGACGACGACCTCGCCGTACTCCTCGACGAGAACCGCCGCCTCAACTCTACTCCCTACCGCATCAGATTGTTCCTCTTCTTCTCCGACTCTTCTCCGCTTGCCGCCGTCGCTATCCGGCACCCGAAGACGGAGGCGTGGTTCTTCGACGCGCTTAAGAGTGCTAAGATTATGGAGCGTGATGCTCACGTGACCTCTCAGGAGTTTGCTTCGGCGGGGTTTTGTTCCTCTGCGGCTGAGTCTATGGTTTTGGATACGACCTCATCTTTTGGCTCCACTTCTTCTTCCGCTTCGTCGACAAATCTGCCTCCGTTGAGGGCTCAGCCTGATGAGAACAACAACATCGACGTCGTTTTGAAGGATAGTAAAGCGAAGCTGAACTCTTCGGATTCGATCTCGTGTGATAATACTGTTTCATCTAGTGTTATGCCCCACAAGCTAAATGTATCTTATGAAGACCCAGTTTATCATGTTTCGGAGGCAAGAACAAATGCTGAATCCATTGAAGCTGGGAGCAAAATCGCTTACATTACCTCTGGGGCTGTAGCAAATAACATGAATATGGATCTAGGGTATGCCTCATTTCCACAGTTTAGTCAAGTGGAGAGTCCACAGTTGCAGTTTATACAAGCTCATCAGCAAATTCTACCAATCCACCCAAGCGGACTGTTACCGGTACCATCATGCCAACCAATGTACCAGCAACCGCAGCCATTGCAGCATATGGTTTACTATCCTAATCAACCGCGTGCTATATACCTTGTGCCTATTGGAAACATCCCTCCCAATGGTTTTCCTATAGCTGCTTCTGGCCAAGCTTCATTGAATCCGAATCCAGATCCTCCCTTAATGAATTGTCATGTAGCTTACAACTCTAGGGGAGAAGCCAGGTCTCCTTTTGGCCATGATTTCGCCCCACCAGATTACTTAACAGACAATGTGATGCCTGCATCTTCTATTCATGTAGCTCATGATGGAAATCAGCAACAAGAAATGGATATTTATTCATTGTATCATCGATCTCCAAATGTATCTATCAATTCTGGGGAATCTCCCAAGTTTGAAAATGAATTTGATGATGGCCTTGCTCGCGATCAGATATACAAATCCCAGCCCCCTCCTCCTAAATACCCGACCATGACAAAAGCTACAGCAAACTTGTTATCTGAGGCTCTTGCTAAATTGCATGTGGATAACCTGAAGCAGCAGACAGAACAGTAG 1491 0.4936 MDPPPPPPPTSSNKLRFMCSHGGQFLPRPRTNTLFYAGGETRIVSFHRHNLTTLSSFTSHLSATLSVAPPFNIKYHLPPHLHLDSLISVSSDDDLAVLLDENRRLNSTPYRIRLFLFFSDSSPLAAVAIRHPKTEAWFFDALKSAKIMERDAHVTSQEFASAGFCSSAAESMVLDTTSSFGSTSSSASSTNLPPLRAQPDENNNIDVVLKDSKAKLNSSDSISCDNTVSSSVMPHKLNVSYEDPVYHVSEARTNAESIEAGSKIAYITSGAVANNMNMDLGYASFPQFSQVESPQLQFIQAHQQILPIHPSGLLPVPSCQPMYQQPQPLQHMVYYPNQPRAIYLVPIGNIPPNGFPIAASGQASLNPNPDPPLMNCHVAYNSRGEARSPFGHDFAPPDYLTDNVMPASSIHVAHDGNQQQEMDIYSLYHRSPNVSINSGESPKFENEFDDGLARDQIYKSQPPPPKYPTMTKATANLLSEALAKLHVDNLKQQTEQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152232g00001 496 SMART PB1_new 29 119 IPR000270 GO:0005515
Stsc152232g00001 496 CDD PB1_UP2 18 117 - -
Stsc152232g00001 496 SUPERFAMILY CAD & PB1 domains 32 124 - -
Stsc152232g00001 496 MobiDBLite consensus disorder prediction 182 198 - -
Stsc152232g00001 496 MobiDBLite consensus disorder prediction 182 203 - -
Stsc152232g00001 496 PANTHER OS05G0427100 PROTEIN-RELATED 9 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152232g00001 Stsc-Chr152232 1246 3789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152232g00001 10 136 MAP Kinase Kinase Kinase AT2G35050 35.659 5.56e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152232g00001 - - aip:107644557 800.431