Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152228g00001 ATGGCCTCCGGGGAAGAGAGGCGGCGTCACCATGATCTTGTGCCTCTTGCTGCATTGCTTAAGAAAGAGATGAAGAGTGAGAAGATGGAGAAGCCCACTGTGAGATATGGTCACGCTGCTCAGTCTAAGAAAGGGGAGGATTACTTTCTAGTCAAGACTGATTGTCAACGAGTACCTGGGAACTCTTCGACTTCCTTTTCGGTTTTTGCGATCTTTGATGGACACAATGGAAATGCTGCAGCCATTTTTGCTAGAGAAAATTTGTTAAATCATGTATTGAGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTGCAAGCTTTGCCTAGGGCATTGGTTGCTGGATTTGTTAAGACTGACAAGGAATTTCAGAGCAGGGGAGAAACTTCTGGAACCACAGCTACCTTTGTTATAGTGGATAGGTGGACTGTGACGGTTGCATCTGTTGGAGATTCCCGTTGTATACTAGATACACAGGGTGGTGCTGTTACCACCTTAACTGTTGATCACAGACTTGAAGAAAATATTGAAGAGAGGGAACGTGTCACCGCAAGTGGAGGTGAAGTCGGGAGGCTTAGCATTGTTGGTGGTGCCGAGATTGGTCCACTTCGTTGCTGGCCTGGGGGTCTATGCCTTTCGAGGTCAATAGGAGACATGGATGTTGGGGAGTTCATAGTTCCAGTACCATATGTGAAACAAGTGAAGCTATCAAATGCTGGTGGTAGGCTTGTAATTGCTTCTGATGGCATCTGGGATGCCCTGTCCTCTGAAGTGGCTGCTAAATCTTGTCGTGGTTTGCCTGCTGAACTTGCGGCTACGCAGGTTGTGAAGGAAGCACTAAGGACAAGAGGGTTAAAGGATGATACAACTTGTATAGTAGTTGACATAATCCCGCCTGTTAATGAATTGCCACCAACTCCTCCCCCCAAAAAGCATAACAAATTCAGAGACCTCTTTTTCAGGAAAAGGTCCCGTGATTCTGCTGGTAAACTGTCAAAGAAGCTTTCAGCTATAAATATAGTGGAGGAACTTTTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGGAGTGATGAGAACTCAGGACAATCAACATCTGGCCTTTTTGTGTGTGCGGTGTGTCAAGTTGATCTTGCTCCAAGTGAGGGTATCTCAGTCCATGCAGGCTCCATCTTCTCCACCAGCTCCAAGCCCTGGCAAGGACCTTTTCTGTGCTTTGATTGCCGTGATAAGAAGGATGCGATGGAGGGAAAACGCCCCAGTGGAGTTAAAGTGGCCTAG 1287 0.4693 MASGEERRRHHDLVPLAALLKKEMKSEKMEKPTVRYGHAAQSKKGEDYFLVKTDCQRVPGNSSTSFSVFAIFDGHNGNAAAIFARENLLNHVLSALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSNAGGRLVIASDGIWDALSSEVAAKSCRGLPAELAATQVVKEALRTRGLKDDTTCIVVDIIPPVNELPPTPPPKKHNKFRDLFFRKRSRDSAGKLSKKLSAINIVEELFEEGSAMLAERLGSDENSGQSTSGLFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCFDCRDKKDAMEGKRPSGVKVA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152228g00001 428 Coils Coil 425 428 - -
Stsc152228g00001 428 SMART PP2C_SIG_2 51 297 IPR001932 -
Stsc152228g00001 428 CDD PP2Cc 36 297 IPR001932 -
Stsc152228g00001 428 FunFam probable protein phosphatase 2C 5 35 302 - -
Stsc152228g00001 428 SUPERFAMILY PP2C-like 33 297 IPR036457 -
Stsc152228g00001 428 SMART PP2C_4 27 295 IPR001932 -
Stsc152228g00001 428 Gene3D - 33 300 IPR036457 -
Stsc152228g00001 428 PANTHER PROTEIN PHOSPHATASE 35 296 IPR015655 GO:0004722|GO:0006470
Stsc152228g00001 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Stsc152228g00001 428 Pfam Protein phosphatase 2C 61 282 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152228g00001 Stsc-Chr152228 3770 7402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152228g00001 1 427 PP2C-type Phosphatase Gene Family AT1G68410 80.275 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152228g00001 - - gmx:100779571 776.163