Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152223g00001 ATGGCCAAGCGTTGGTGGGACGAAGAAAACCACCGCACTCCGTCGAGCAGCACCAACGGCGATCACGACAACGACGGAGGTGATGACAACAATACCAACTCCAGTGCCGCCGACCGAAAAGGAGGAAGCGGCCGTAGGCCACGAGGCCGGCCACCGGGGTCGAAGAACAAGCCAAAACAACCCATGGTTATTAAGAAGGACTTCCCAAACGCCCTTCAAAGCCATATTCTAGAGATCAGCGACGGAGCTGACGTGGCCGATTGCCTTTCCACTTTCGCAACCCGCCGCCACCGTGGCGTCTCCGTGCTAAGCGGAACCGGCACTGTCACCAACGTCACTCTCGGCCAGCCAGCGGCTCCCGGAGGCGCCGTTTCACTCCAAGGAACGTTCCAGATCCTTTCCCTCTCCGGTGCGATTCTCCCCCCTCCATCGCCGCCGGGAGCCGCCGGGCTGGCGGTTTACCTCGCCGGAGTTCAGGGAGAGGTGATTGGCGGTAGGGTGGTGGGATCGCTGGTGGCTTGTGGAACGGTGATGGTGGTTGCAGCAACGTTCGCTAATGCCACGTATGAAAGGCTGCCATTAGAAGAAGACGAGGAAGCAGAAGATGAAGAGATGCGGGTGCAGGTGGAGCCGCGGAAGGAGCAGCAATCTGGTGTGGTCGAGGGTTGTAGTGGACCACCTGAAGCAGCACCAGAAGCACAGCAACGGGTTTATAGTAATGTTCGTTCCGGTTTGATAGCTAATAACACTACTGAAATGGCGGCTCATGATGATGATGATGTGTTTTGGTGA 792 0.577 MAKRWWDEENHRTPSSSTNGDHDNDGGDDNNTNSSAADRKGGSGRRPRGRPPGSKNKPKQPMVIKKDFPNALQSHILEISDGADVADCLSTFATRRHRGVSVLSGTGTVTNVTLGQPAAPGGAVSLQGTFQILSLSGAILPPPSPPGAAGLAVYLAGVQGEVIGGRVVGSLVACGTVMVVAATFANATYERLPLEEDEEAEDEEMRVQVEPRKEQQSGVVEGCSGPPEAAPEAQQRVYSNVRSGLIANNTTEMAAHDDDDVFW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152223g00001 263 CDD DUF296 75 184 IPR005175 -
Stsc152223g00001 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 223 IPR014476 GO:0003680
Stsc152223g00001 263 MobiDBLite consensus disorder prediction 1 63 - -
Stsc152223g00001 263 PIRSF ESCAROLA 2 262 IPR014476 GO:0003680
Stsc152223g00001 263 Gene3D - 73 211 - -
Stsc152223g00001 263 ProSiteProfiles PPC domain profile profile. 69 208 IPR005175 -
Stsc152223g00001 263 MobiDBLite consensus disorder prediction 194 236 - -
Stsc152223g00001 263 FunFam AT-hook motif nuclear-localized protein 72 200 - -
Stsc152223g00001 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 185 IPR005175 -
Stsc152223g00001 263 MobiDBLite consensus disorder prediction 1 28 - -
Stsc152223g00001 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152223g00001 Stsc-Chr152223 2335 4228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152223g00001 45 199 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 72.258 5.68e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152223g00001 - - gmx:100787100 211.075