Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152221g00002 ATGGTGTCAGATATACCGTACTCATTCGGACGGAACTGCTCTGATTCAACGGGAAGTGATGGCAGAGCTATGCAGTTGTGTGGGATGGACCGTGAGGCAAGGGTGCTGAGATACAGGGAGAAGAGGAAGAACTACAAGTTCGAGAAAACCATCAGATACGCGTCGCGGAAGGCGTACGCCAAAACCCGACCAAGGATCAAGGGGCGGTTCGCTAAACGGATTAAAATCGAGTCGGTGGTGGATCGCCTGTATTGCCCCGCCGGTGGGGTCCTTGGGTGGGAAAATTTCTATGAGAGGAGAGCGAACTGGTGTGAGGGGGTTGGAGTGCTGAGCGCGGATAACACAGTGAGGATTTCGGCTACGCCGGTGGAAGAAATAAGGGGGTCAGTGGGGATGGGTTTGCATCAGGTGTCTGGAGGAAAACTCATTGGGCTACAGGTGTGTCGTATTGGGGCGGCGTGA 462 0.5433 MVSDIPYSFGRNCSDSTGSDGRAMQLCGMDREARVLRYREKRKNYKFEKTIRYASRKAYAKTRPRIKGRFAKRIKIESVVDRLYCPAGGVLGWENFYERRANWCEGVGVLSADNTVRISATPVEEIRGSVGMGLHQVSGGKLIGLQVCRIGAA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152221g00002 153 Pfam CCT motif 31 73 IPR010402 GO:0005515
Stsc152221g00002 153 ProSiteProfiles CCT domain profile. 31 73 IPR010402 GO:0005515
Stsc152221g00002 153 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 73 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152221g00002 Stsc-Chr152221 1897 6766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152221g00002 14 78 C2C2-CO-like Transcription Factor Family AT5G57660 73.846 6.66e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc152221g00002 CCT 6.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152221g00002 - - gmx:100805693 132.109