Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152219g00002 ATGACTCTTCCTCACTTACTCTCAGCCTTGAATCTTCCACCCTCTAAAACTTGGGTGGTGCCGCGCTTCATGCGCTTTCTAGCGCACAACGGACTCTTTACTATTGTAAGAGTTCACGACGACAACGGCGAAGAAGAAGAAAAAGAAAAAGAAGCATACGCTCTAACCCCGGCGTCAGAGCTACTTGTTGAAGGGACTAAGTATTGCTTTTTCCCAGTTATTAAGAGTACTCTTGTTCACGAAACGATTGATGCAACTCTTAGAATAGGAGACTGGATCCGCGGGGAAGAGCTTTCAGTATTTGACACAGCACATGGAGTTAGCTTTTGGGATTTGATTCATAACAATCCCGAATTGATGATTGCCTTCAATGAGTCCATGGCAAGTGATTCTCAAATAGTGAGCTTGGCATTGAGAGATTGCAATTCGGTGTTTGAAGGGGTAGAATCTGTTGTAGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATTTGTGAGGCATTTCCTCAGTTGCAATACATTGTGCTTGATCTTCCATCAGTTGTTTCAAATTTGACAGGAAATGCTAATTTGAATTATGTTGGTGGAGACATGTTTGTATCTATTCCTCAAGCCCATGCAGTCTTATTAAAGTGGGTTTTACACGATTGGAATGATGGAGACTGCATAAAAATTCTAAAAAACTGCAAAAAATCTATTTCACAAAAAGGAAAAGTTATTATCATTGATACAGTAATAAATAATGAAGAACAAGATGATGAAATGACCTCAGTAAAACTTCTCTTTGATATAAACATGGCAGCTACTTTGAGTGCAAAAGAACGAAATGAAAAAGAATGGAAACAACTCTTCGTAGAAGCTGGTTTCACCAACTACAAAATATATCCTATATTTGGTTTTAGATCTCTTATAGAACTCTATGTTTAG 930 0.3849 MTLPHLLSALNLPPSKTWVVPRFMRFLAHNGLFTIVRVHDDNGEEEEKEKEAYALTPASELLVEGTKYCFFPVIKSTLVHETIDATLRIGDWIRGEELSVFDTAHGVSFWDLIHNNPELMIAFNESMASDSQIVSLALRDCNSVFEGVESVVDVGGGNGATGKIICEAFPQLQYIVLDLPSVVSNLTGNANLNYVGGDMFVSIPQAHAVLLKWVLHDWNDGDCIKILKNCKKSISQKGKVIIIDTVINNEEQDDEMTSVKLLFDINMAATLSAKERNEKEWKQLFVEAGFTNYKIYPIFGFRSLIELYV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152219g00002 309 PIRSF O-mtase 1 309 IPR016461 GO:0008168
Stsc152219g00002 309 SUPERFAMILY "Winged helix" DNA-binding domain 1 65 IPR036390 -
Stsc152219g00002 309 Gene3D Vaccinia Virus protein VP39 65 308 IPR029063 -
Stsc152219g00002 309 PANTHER O-METHYLTRANSFERASE 1 294 IPR016461 GO:0008168
Stsc152219g00002 309 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 309 IPR016461 GO:0008168
Stsc152219g00002 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 307 IPR029063 -
Stsc152219g00002 309 FunFam O-methyltransferase ZRP4 64 309 - -
Stsc152219g00002 309 Gene3D - 1 62 IPR036388 -
Stsc152219g00002 309 Pfam O-methyltransferase domain 90 290 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152219g00002 Stsc-Chr152219 9793 11311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152219g00002 4 308 Monolignol Biosynthesis Gene Families AT1G51990 32.051 4.65e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152219g00002 K22588 - gmx:100818724 338.576