Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152219g00001 ATGAGGGGCCATAGTTATGGCAAGCTCTTTGAAGGGCAAGCTCACGTATACAAACTCATATTTAGCTTTCTCACTTCCATGTGTCTCAAATGGGCTACTGAATTAGATATACCAACAATAATCCACAAACATGGCAAACCCATCACTCTTCCTCACTTACTCACAGCCTTGAATCTTCCACCCTCTAAGACTTGGGTGGTGCCGCGCTTCATGCGCTTTTTAGTTCACAATGGACTCTTTGCTATTGTAAGAGTTCGCGACGACGACAACAGAGGAGAAGAAGAAGAAAAGGAAGCATACGCTCTAACCCCGGCGTCAGAGCTACTTGTTGAAGGCACTAATAACCATAGCTTGTCCCCAGTTCTTAAGAGTACTCTTAACGTAATGGTTGGTGCAACCCTTAGAATGGGGGAATGGGTACGCCGGGAAGAGCGCTCAGTTGTTGAGACTGCCCTTGGATTTAGCTTTTGGGATTTGATTCATAGCAATCCCGAAGTCATGAGTGCCTTCAATGAGGCCATGGCATGTGATTCTCAGATGGTGAACTTGGCATTGAGAGATTGCAATTCAGTGTTTGAAGGGATAGATTCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACCGGTAAAATCATCTCTGAGGCATTTCCTGAGATGAAATTCATAGTGTTTGACCTTCCACCAGTTGTTGCAGATTTGAGAGGAAGTGGTAATTTGAGTTATGTTGGTGGAGACATGTTTCAATCTATTCCTCAAGCTGATGCAGTGCTATTAAAGTGGGTTTTGCACAATTGGAATGATGAAGACTGCATCAAAATTCTAAAAAACTGCAAAAAATCTATTTCGGAAAAAGGAAAAGTGATTATCATTGATACAGTCATAAATAACGAACAGCTGGAGGAAGACGAAATGACATCGCTAAAACTTCTTTTTGATATAAACATGGCAGCTACTTTGGGTGCAAAAGAAAGAAGTGAAAAAGAATGGAAGCAACTCTTTGTTGAAGCTGGTTTCAACAATTACAAAATATTTCCTATGTTTGGTTTCAGATCTCTCATAGAAGTCCATCCTTAG 1074 0.4162 MRGHSYGKLFEGQAHVYKLIFSFLTSMCLKWATELDIPTIIHKHGKPITLPHLLTALNLPPSKTWVVPRFMRFLVHNGLFAIVRVRDDDNRGEEEEKEAYALTPASELLVEGTNNHSLSPVLKSTLNVMVGATLRMGEWVRREERSVVETALGFSFWDLIHSNPEVMSAFNEAMACDSQMVNLALRDCNSVFEGIDSVVDVGGGNGATGKIISEAFPEMKFIVFDLPPVVADLRGSGNLSYVGGDMFQSIPQADAVLLKWVLHNWNDEDCIKILKNCKKSISEKGKVIIIDTVINNEQLEEDEMTSLKLLFDINMAATLGAKERSEKEWKQLFVEAGFNNYKIFPMFGFRSLIEVHP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152219g00001 357 PANTHER O-METHYLTRANSFERASE 21 342 IPR016461 GO:0008168
Stsc152219g00001 357 Gene3D Vaccinia Virus protein VP39 114 357 IPR029063 -
Stsc152219g00001 357 Pfam Dimerisation domain 27 75 IPR012967 GO:0046983
Stsc152219g00001 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Stsc152219g00001 357 SUPERFAMILY "Winged helix" DNA-binding domain 8 112 IPR036390 -
Stsc152219g00001 357 Pfam O-methyltransferase domain 136 339 IPR001077 GO:0008171
Stsc152219g00001 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 355 IPR029063 -
Stsc152219g00001 357 CDD AdoMet_MTases 198 294 - -
Stsc152219g00001 357 Gene3D - 4 109 IPR036388 -
Stsc152219g00001 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 357 IPR016461 GO:0008168
Stsc152219g00001 357 FunFam Coniferyl alcohol 9-O-methyltransferase 1 109 - -
Stsc152219g00001 357 FunFam O-methyltransferase ZRP4 112 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152219g00001 Stsc-Chr152219 3425 5344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152219g00001 29 357 Monolignol Biosynthesis Gene Families AT1G51990 32.448 7.14e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152219g00001 K22588 K13262 gmx:100818724 389.037