Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152217g00001 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTAACCTTCTCGAAGAGAAGGAACGGTTTATTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGAAAATTCTACGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGAAAGATACAACAAAACCAAAGAAGAACAAAATCAGCTTGGGAGTTCAACCTCGGAAGTTATGTTTTGGCAAAGGGAGGCGGCAATGCTAAGGCAACAACTGCTAAATTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTATCAGGTTTGACAATCAAAGACTTGCAGAGTTTGGAGAACCAATTGGAAGTTAGTCTTCGTGGTGTCCGTACAAAAAAGGACCGCCTTTTAATGGATGAAATACAAGAATTAAATCGGAAGGGGAACCTCATACACCAAGAAAATGTGGAACTATATGAGAAGGTAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGGTATTAACAAAAGATCATCAGAATGTAGAGAATAGAAATTCTGTTTTGACAAACAATCTAGCCATACAAGAGGATTCTGAAGTTCCTGCTGTGAGTCTCCAACTAAGCCAACCACAACAAGAACACCATGAGACATGTTCGGGAGCAAAAAAATAG 705 0.4071 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKFYDFSSTSMKSVVERYNKTKEEQNQLGSSTSEVMFWQREAAMLRQQLLNLQESHRQIMGEELSGLTIKDLQSLENQLEVSLRGVRTKKDRLLMDEIQELNRKGNLIHQENVELYEKVNLIRQENMELKKKVLTKDHQNVENRNSVLTNNLAIQEDSEVPAVSLQLSQPQQEHHETCSGAKK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152217g00001 234 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc152217g00001 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Stsc152217g00001 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc152217g00001 234 Coils Coil 163 195 - -
Stsc152217g00001 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc152217g00001 234 MobiDBLite consensus disorder prediction 212 226 - -
Stsc152217g00001 234 Coils Coil 86 106 - -
Stsc152217g00001 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc152217g00001 234 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc152217g00001 234 MobiDBLite consensus disorder prediction 212 234 - -
Stsc152217g00001 234 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc152217g00001 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152217g00001 Stsc-Chr152217 3242 14326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152217g00001 1 232 MADS-box Gene Family AT4G37940 58.190 3.90e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc152217g00001 K-box 4.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152217g00001 K09264 - gmx:100812413 360.147