Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152215g00003 ATGAAGATGAGGTCTGCTCTGATGGTGGCAGTGTATCAGAAACAGCTAAGGCTCTCTAGCCCGGCTCGCATGAGGCACTCGGCCGGGGAAATTGTTAACTACATCGCGGTGGATGCATACAGAATGGGAGAGTTTCCTTGGTGGCTTCATGTGACATGGGCTTGTGTAGTGCAGCTTATATTGTCTCTTACCGTTCTATTCGGCATTGTAGGACTCGGTGCCCTGCCTGGGCTAGTTCCTTTCATAATCTGTGGACTGCTCAATGTGCCATTTGCAAAGGTGATACAAAAGTCTCAGTCTCAGTTCATGTTAGCACAAGATGAGCGCTTAAGATCAACTTCAGAGATACTTAACAGTATGAAGATCATCAAGTTACAATCTTGGGAGGAAAAATTCAAGAGTTTGATTGAATCGCTTCGCGCAAAAGAATTTATATGGTTGTCTAAGACACAGATCATGAAGGGTTATGGCTCAATTCTTTACTGGATGGCTCCTACAATTGTTTCAGCTTTTGTGTTCCTAGGATGTATTGTGTTCCACAGTGCTCCATTGGATGCAGGGACAATTTTCACAGTTCTTGCAACACTGAGGATCATGTCAGAACCAGTAAGAATGATCCCTGAGGCTCTGTCTGTTCTTATCCAAGTTGTGGTATCTTTCGATCGGCTCAATACCTTTTTGCTTGATGAAGAGTTAGGCAGTGATGAAATTGTAAGGAGTGTTAAGCAAAGTTCAGATGGTGACAACAATGCTGTAAAAGTTGAAGGTGGAAACTTTACTTGGGATCAGGAATCAGGGTCGCCAACTTTAGCTGATGTGAATTTGGAAGTGAAATGGGGGCACAAAGTAGCAGTTGTTGGGCCAGTTGGAGGTGGAAAATCATCTCTCTTGCATGCAATACTTGGAGAGATTCCAAAGATTTCAGGAAATGTTAATGTATATGGCACCATAGCCTATGTTTCTCAAATTTCTTGGATCCAAAGTGGAACAGTAAGAGATAACATACTCTTTGGCAAGCCAATGGACAAGAAAAGATATCAGAATGCCATTAAGGTCTGTGCCTTGGATAAGGACATCAATGATTTCAGCCATGGCGATCTGACAGAAATTGGTCAGCGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTGTACAATGATGCTGACATTTATCTCTTTGATGATCCTTTCAGTGCTGTTGATGCACACACTGCTGCTCATTTATTCAATG 1252 0.4281 MKMRSALMVAVYQKQLRLSSPARMRHSAGEIVNYIAVDAYRMGEFPWWLHVTWACVVQLILSLTVLFGIVGLGALPGLVPFIICGLLNVPFAKVIQKSQSQFMLAQDERLRSTSEILNSMKIIKLQSWEEKFKSLIESLRAKEFIWLSKTQIMKGYGSILYWMAPTIVSAFVFLGCIVFHSAPLDAGTIFTVLATLRIMSEPVRMIPEALSVLIQVVVSFDRLNTFLLDEELGSDEIVRSVKQSSDGDNNAVKVEGGNFTWDQESGSPTLADVNLEVKWGHKVAVVGPVGGGKSSLLHAILGEIPKISGNVNVYGTIAYVSQISWIQSGTVRDNILFGKPMDKKRYQNAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAHLFN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152215g00003 417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 252 417 IPR003439 GO:0005524
Stsc152215g00003 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 416 IPR027417 -
Stsc152215g00003 417 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 417 - -
Stsc152215g00003 417 CDD ABC_6TM_ABCC_D1 1 223 IPR044746 GO:0140359
Stsc152215g00003 417 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc152215g00003 417 Gene3D ABC transporter type 1, transmembrane domain 1 227 IPR036640 GO:0005524|GO:0016020
Stsc152215g00003 417 CDD ABCC_MRP_domain1 252 417 - -
Stsc152215g00003 417 Gene3D - 228 417 IPR027417 -
Stsc152215g00003 417 SUPERFAMILY ABC transporter transmembrane region 2 229 IPR036640 GO:0005524|GO:0016020
Stsc152215g00003 417 FunFam Multidrug resistance-associated protein 1 236 417 - -
Stsc152215g00003 417 Pfam ABC transporter transmembrane region 1 202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc152215g00003 417 FunFam ABC transporter C family member 10 1 231 - -
Stsc152215g00003 417 ProSitePatterns ABC transporters family signature. 377 391 IPR017871 GO:0005524|GO:0016887
Stsc152215g00003 417 Pfam ABC transporter 270 404 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152215g00003 Stsc-Chr152215 17406 18933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152215g00003 252 411 Calmodulin-binding Proteins AT2G36910 31.034 1.02e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152215g00003 - - gmx:100804798 659.448