LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc152213g00001	ATGATGTGCCTGCAGCAGCAACAACAGCTACTACTACTAATTCTTCTACAGCAACAACAAGTGGTNNNNNNNNNNGATCAGAAACATGCTCTTGCAGTTGCTGTGGCAACAGCTGAAGCTGCCATGGCAACTGCTCAAGCTGCAGTTGAAGCAGCAAGGCTGAACAAGCCTAACAATAATAGTACCAATAATAATAATAATAATTATAATAATAATAATAATAGTTACAATAATGGTGCTCCTAATCATCACCACCATCATGCTAGGGTGCATTATTCTGCTATAGTGATTCAAACTGCTTTTAGAGGATACTTGGCAAGAAGAGCACTAAGAGCATTGAAGGGGTTGGTGAAGTTGCAAGCATTGGTAAGAGGACACAATGTAAGAAAACAAGCAAAGATGACACTAAGGTGCATGCAGGCACTTGTTAGGGTCCAAGCAAGGGTTCTTGATCAGAGGATAAGGTCTTCATCACTTGAAGGAAGCAGAAAATCCACATTCAGTGACACTGCTAGTGTTTGGGATCATTCCCGGTACCTTCAGGACATTTGTGATAGAAAATCACTATCAAGAGAAGGAAGCAGCATTGCAGATGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCAATGTTGCAGCAGAGAAAGGAAGCTGCCATGAAAAGGGACAAGTCACTATCTCAAGCTTTCTCTCAGCAGATTTGGAGGAATGGAAGGAAATCGTCAATTGGAAATGAAGATGAGCTCGAAGAGAGGCCGAAATGGCTCGACCGGTGGATGGCGACGAAGCCATGGGAGACAAGAGGAAGAGCTTCAACTGATCAAAGAGATCCAATTAAGACGGTCGAAATCGATACCTCGCAGCCATACTCATACCTTGGGACTAATTATAGAAGATCACATCCAAACTATCAGTATAATCCTCACCATCATCAGCCTCAAAGGCATTCAATCGCTTCGCCGCTCCATAGAACACACCAAAATGGATCCCTTCACCACTCCCCTGCAACACCATCTCCGGCGAAATCAAGGCCGATCCAAGTCCGGTCCGCTAGCCCTCGATGTGTTAGAGATGATAGAAGCTACCACACTTCTCAGACACCAAGCTTGAGGTCTAATTATCATTACACCGGTAGCTTGTGCCAAAATGGCGGCCGAGCCGGAACTAGTAGTAGTAGTGGTGGTGGTGGTACATTGCCTAATTATATGGCTGCAACCGAGTCCGCGAAGGCTAGGATTCGGTCACAGAGTGCGCCGAGGCAGAGGCCGTCGACGCCGGAGAGGGATAGAGTTGGTGGAGTAAAGAAAAGGCTCTCTTTTCCTGTTCCTCCTGATCCATACAATGTAGGAATGGGGTATGGAAATTATGGCCATAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGCTTCACACTTTGGGTTGGAGCAACAATCAAATTACTCTTCTTGCTGCACTGAGAGTCTTGGTGGTGAGATTTCTCCTTCTTCAACTAGTGATCTTAGAAGGTGGTTGAGGTAA	1527	0.4519	MMCLQQQQQLLLLILLQQQQVVXXXDQKHALAVAVATAEAAMATAQAAVEAARLNKPNNNSTNNNNNNYNNNNNSYNNGAPNHHHHHARVHYSAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSSLEGSRKSTFSDTASVWDHSRYLQDICDRKSLSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQIWRNGRKSSIGNEDELEERPKWLDRWMATKPWETRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNGSLHHSPATPSPAKSRPIQVRSASPRCVRDDRSYHTSQTPSLRSNYHYTGSLCQNGGRAGTSSSSGGGGTLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGGVKKRLSFPVPPDPYNVGMGYGNYGHSLRSPSFKSVSASHFGLEQQSNYSSCCTESLGGEISPSSTSDLRRWLR	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	284	348	-	-
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	268	433	-	-
	Stsc152213g00001	508	ProSiteProfiles	IQ motif profile.	91	118	IPR000048	GO:0005515
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	268	283	-	-
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	52	85	-	-
	Stsc152213g00001	508	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	85	134	IPR027417	-
	Stsc152213g00001	508	Gene3D	-	88	143	-	-
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	53	81	-	-
	Stsc152213g00001	508	PANTHER	IQ-DOMAIN 5-RELATED	26	443	-	-
	Stsc152213g00001	508	Pfam	Protein of unknown function (DUF4005)	354	457	IPR025064	-
	Stsc152213g00001	508	Coils	Coil	35	55	-	-
	Stsc152213g00001	508	Pfam	IQ calmodulin-binding motif	117	133	IPR000048	GO:0005515
	Stsc152213g00001	508	Pfam	IQ calmodulin-binding motif	93	111	IPR000048	GO:0005515
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	486	508	-	-
	Stsc152213g00001	508	SMART	iq_5	89	111	IPR000048	GO:0005515
	Stsc152213g00001	508	SMART	iq_5	112	133	IPR000048	GO:0005515
	Stsc152213g00001	508	MobiDBLite	consensus disorder prediction	364	401	-	-
	Stsc152213g00001	508	FunFam	IQ-domain 11	89	140	-	-
	Stsc152213g00001	508	ProSiteProfiles	IQ motif profile.	114	141	IPR000048	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc152213g00001	Stsc-Chr152213	9632	12670	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc152213g00001	86	508	IQD Protein Family	AT1G01110	63.039	5.24e-170	488

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc152213g00001	-		-	adu:107472901	832.017