Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152206g00002 ATGAATTCACCATCGACGCAGTTCGTTTCATCGAGAAGGATGGGTGTGTATGATCCTATCCAGCAGATCAATATGTGGGGAGAAAGCCTCAAAAGCAATGTGAATTTAGCTGCATCCATTCCCTTAATTGATGAAGCCGAAATAAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATGCTCGGAACAAATAACAAATATGACCAAGAAGCCAGTAAACCTATTGATAAGATACAGAGAAGACTTGCGCAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGATGCAGCTAGAGCAAGAGCTCGAACGTGCGAGACAGCAGGGAATGTATGTAGGTGGTGGATTGGATACTAATCATCTAGGATTTGCTGGACCCATTAATTCAGGGATCACAACTTTTGAGATGGAGTATGGACACTGGGTCGAGAAGCAAAATAGTCAAATTTTAGAGCTGAGAAACGCCTTAAATTCTCATATTGGTGACTTAGAGCTGAGGATACTTGTAGATGATATGATGAATCATTACAGTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCAGACGTATTCTATGTAATGTCCGGTATGTGGAAAACTACTGCCGAGAGATTTTTCTTATGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGGTTCTTCTCCCTCTGATTGAACCTTTGACGGAGCAACAACGATTGGATGTCTGCAACCTTGGACAATCATGTCAGCAAGCGGAAGATGCCCTTTCACAAGGTATGGAGAAACTACAGCAAACCCTTGCCGATAGCATAGCAGCCGGACAACTGATGGAAGGAAGTTATATTCCGCAGATGGCTACTGCTATAGAGAAGTTGGAAGCACTGGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGAAGGAGACACTGCAACAGATGTCTCGGATATTGACTATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATACTTCCAACGCCTGAGAGCTCTAAGCTCGCTTTGGTCGAACCGTCCTCGCGAACCAGCTTAG 1089 0.4472 MNSPSTQFVSSRRMGVYDPIQQINMWGESLKSNVNLAASIPLIDEAEIKFDSQSEDASHGMLGTNNKYDQEASKPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYVGGGLDTNHLGFAGPINSGITTFEMEYGHWVEKQNSQILELRNALNSHIGDLELRILVDDMMNHYSEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDVCNLGQSCQQAEDALSQGMEKLQQTLADSIAAGQLMEGSYIPQMATAIEKLEALVSFVNQADHLRKETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152206g00002 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Stsc152206g00002 362 Gene3D - 77 126 - -
Stsc152206g00002 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Stsc152206g00002 362 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Stsc152206g00002 362 CDD bZIP_HBP1b-like 78 130 - -
Stsc152206g00002 362 Pfam bZIP transcription factor 78 112 IPR004827 GO:0003700|GO:0006355
Stsc152206g00002 362 Coils Coil 97 124 - -
Stsc152206g00002 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Stsc152206g00002 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Stsc152206g00002 362 FunFam BZIP family transcription factor 77 126 - -
Stsc152206g00002 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Stsc152206g00002 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152206g00002 Stsc-Chr152206 8180 13086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152206g00002 1 362 Calmodulin-binding Proteins AT5G65210 71.467 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc152206g00002 DOG1 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152206g00002 K14431 - gmx:100793353 619.387