Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152198g00001 ATGGAGTTTGGAGAGAACGTCAATTTCGTACTTGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTATTAGCATTGAGTACTGCATTTGGTGGTCGAGCTAAAGGGACTGACAGGGCAAAGCAGTTGAAGGAGTTCATCAAAACTGGTTGCAGGAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAAGATGCTTTTAAGCCCGAAATATATGGTGATGTTATCACTGTTGAACGTAGGATATCTGAATCCACATGCTCCATTATTTTAAAAGACCACCAAGGAAAGAGAGTGGCTCATCGGATGGCGGATCTCCGGGAAATCGTTGAGCATTTTAATATTGATGTGGACAATCCGTGTGTAATCATGAATCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAACAAGAAAGATAAATTTAAGGCCACACTCCTACAACAAGTCAATGATCTCTTGGAAACCATTTCTAAAGAAATAGGTGTTGCACATGGCATAGTTAATGACTTAGAGGGTTCAATAAAGCCCATTGAGAAGGAGCTTAATGAGCTGCAAGCCAAAATCAAAGCTATGGAACACATTGAACAAATGTATGCAGAGGTTAAAAAATTAAAGAATAAACTTGCATGGTCTTGGGTCTATGATGTGGATAAGAAGCTTGAGGCGAAAAGTGCAATGATTGATAAGCTAAAGAACCGGATACCTGCCTGCCAAGCTAAGATTGATAAATACTTGCTTGATATTGAAAGATTGAAGGAAGGAATCTCCAAGAATGATGAAATTGCAATTATGACTGAAAAGCTTACACAACTTAATCAAATTATTGAGGATCAAAGAAAGCCTTTATCCATGGCTAGAAAAGAAGTGCTCGTACTTGAGCAGGACTGTAATTTCAAAGCTAGCGTAATACAGAAGATGTTACAGCGACTTAAAAAACTTGAAAAAGAAGTACAGGATCTTCATGAGCTGAATGTGAAAAATACTCAGGCTGAAAAATCTGACTTGGAGGAGAAGCTTAAGGGTCTCCAAGTTGAGGTTCAAGCCGCTGAGCTAGAATGGGAAAGGTCAAAGGAGGAAGAGACTAGGTTGATGAAAAGCATAAATATGCAAAAGGAACAAATTAAGACAATTGCTAATAAGATCCAAGATCATGAAAACAATCGTAATGAATTCTCCGAGGATATCCGCATTTATGAACGGAGGCAGCGCAACAAGATTGAATTTTTTGGAGGAGGAAGAGTATTGAATCTGATACGTTTAATTGAGAGAGATCATCGAAGGTTTAATGTGCCACCAATTGGTCCAATTGGTGTCCATTTGAATTTACGTGATGCTGAAAAATGGGCTGCTACTGTTGAACTTGCCATTGGGGCAATGCTCAATTCCTTTATAGTAACTGATCATAAGGATTTTCATCTTCTGAAACAATTGGCGAAGGAAGCAAACTATAGCAACCTTCGAATTATTATTTATGATTTTAAAATACAAAGGTTAGAAATACCACCGGACAATCTTCCCAAGACAGAACATCCATCAACACTTTCCCTTTTACAATCTGAGAACGACACTGTGATTAATGTCTTGGTGGATCAAGTAATTAACAAATTCCTTGCTTGTGCTTTAGCTATTAATCAATCACTATCAGCTTTGATGTTGAGTCCTAAGAGCTCCACATTGGAGGGCCAACACTTAAGATAG 1701 0.3833 MEFGENVNFVLGQNGSGKSAILLALSTAFGGRAKGTDRAKQLKEFIKTGCRNAVIHVEIQNEGEDAFKPEIYGDVITVERRISESTCSIILKDHQGKRVAHRMADLREIVEHFNIDVDNPCVIMNQDKSREFLHSGNKKDKFKATLLQQVNDLLETISKEIGVAHGIVNDLEGSIKPIEKELNELQAKIKAMEHIEQMYAEVKKLKNKLAWSWVYDVDKKLEAKSAMIDKLKNRIPACQAKIDKYLLDIERLKEGISKNDEIAIMTEKLTQLNQIIEDQRKPLSMARKEVLVLEQDCNFKASVIQKMLQRLKKLEKEVQDLHELNVKNTQAEKSDLEEKLKGLQVEVQAAELEWERSKEEETRLMKSINMQKEQIKTIANKIQDHENNRNEFSEDIRIYERRQRNKIEFFGGGRVLNLIRLIERDHRRFNVPPIGPIGVHLNLRDAEKWAATVELAIGAMLNSFIVTDHKDFHLLKQLAKEANYSNLRIIIYDFKIQRLEIPPDNLPKTEHPSTLSLLQSENDTVINVLVDQVINKFLACALAINQSLSALMLSPKSSTLEGQHLR 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152198g00001 566 Coils Coil 168 208 - -
Stsc152198g00001 566 Gene3D - 143 291 - -
Stsc152198g00001 566 Coils Coil 304 360 - -
Stsc152198g00001 566 Coils Coil 368 402 - -
Stsc152198g00001 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 287 IPR027417 -
Stsc152198g00001 566 Gene3D - 1 135 IPR027417 -
Stsc152198g00001 566 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 2 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152198g00001 Stsc-Chr152198 3931 13368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152198g00001 1 531 Structural Maintenance of Chromosomes family AT5G07660 51.493 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152198g00001 K22804 - gmx:100816916 641.728