Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152197g00005 ATGGGCGCGCGCTCGGCTTTGCTTGTGCGCGCACCTGCAGCATCCAATAATGTCCAGTTATCGTTCACCTTCGCTAACATTTTTATTGCTCTTTTGGGAATTCTATCACCCTGCTCTTCCTATTCGGATGCTGAGGCGCTCTTGAAGTTCAGAGCTTCATTGAGAAATGCGGTTTCCCTCAGCAGCTGGGATCCATCCATAAACCCAAACCCACCGTGCTCTGGCAACATTACCAGTTGGGTGGGTCTCTATTGTAATCAAGACAAGGTTCGGGGGTTACGCCTTGAGAGCATGGGCCTCAACGGCAACATTGACATCGCTTCTCTCTCTTCAATGCCCGCTTTGCGGATGCTTAGCCTAATGAACAATACCTTTGCGGGTCCCTTGCCCAACATCAAGATGCTGCCTAATTTGAAGGCCCTCTACCTGTCTTTTAATCATTTCTCTGGAGACATATCTGATGATGCATTTGCAGGTTTTAGTCGATTGAAGAAACTTTATTTGGCAAATAACGACTTCACTGGTAAAATTCCATCTTCCATTGCTGCATTGCCTAGTCTCCTATACCTCAGGCTTGATGGTAACAAGTTTCATGGCCAAATTCCCGATTTTCCACGCAGCAATGATTTAATGACTTTCAACGTCGCTAACAATGATTTAGAGGGCCCCATCCCGACCAATCTAAGCACCTTCGGTCCTGCCTCCTTTAGCGGAAACAAACGTTTATGCGGGCCACCACTGACAAATCTATGCCCAGCTACGACAGGAAGCCAGGATGGCAAAGAGCATGTTATGAAAACTATAGTGATTGTGATAGGGGTAATAGTGGTTGTAGCTATCCTGGTTGCAGTGTTAGTCATATGGCGCTTGAGACTCAAGTCCCGCGATCACAATCGAATAAATAATCATGAGGTCCCAAATTTCCAAGGCCAGACCTCCGACAAGTACGTTCCGCCAGTTTACGTCAAAACCAAAAGCCTAGCAGAACACTATGATGCTGCTACAACTCCTAAGAAGGTTCTCAGTTCTGGGCATTCCAAGAAGGTGGAGCAAGGCAAGCTCATATTCCTGAATTGTGACAGCGGAGTCAAGTTTGATTTGCCAGATTTGTTAAGGGCCTCCGCCGAAATTCTAGGCAGTAATACATTTGGCTCTTCCTACAAGGCCGTTATCTTGGACGGTCAAGCTGTGGTTGTCAAGAGGTATAAGCAAATGAACAATGTGCCCAGAGAGGAGTTCCACGAACACATGAGAAGGCTTGGCAATCTCAACCACCCCAATATTCTGCCCGATATGGCCTACTACTATAGGAAAGAAGAGAAGCTCTTGATTTCTGTCTATGTACAAAATGGTTGCTTAGCCAGCCATCTTCATGGTAATCGCAACAAAGAAAAGCAGGGCCTTGACTGGCCAACCCGATTGAAAATAGTGAAAGGTGTAGCGAGGGGCTTGGCCTACCTATACAACGCACTCCCAAGCGTTGTTGCGCCTCATGGTCACCTCAAATCTTCCAATGTGCTTTTGGATGAATCTTTTGAGCCCCTACTGACTGATTACGGGCTCAGTCCTTTGATCAACCTTGATCGTGCCCAACAAGTCATCATGCCTTACAAATCACCCGAGTATGCTCAACTTGGGCGCATAACAAGGAAGACTGATATGTGGAGTTTTGGAATTCTGATTCTGGAGATATTGACAGGTAAATTTCCAGAGAACTATCTTGCACAGACACATAACAGTGATTCGGACATTGCCAACTGGGTCAATACCATGATTACGGAGAAGCGCACCAGCGAAGTGTTTGACGCAGACATGGGAGGATTTGGCAATAGTAAAGCTGAATTGCTGAAACTCTTAAAGATTGGCTTGAGTTGTTGTGAGGAAAATGTTGAAAGAAGGTTGGATATGAAGGAAGCTCTTGACCAAATAGAAGATTTGAAGGAGGTTGAAAGTGATGGAGAATACTCTTCTACTTTAGTAACTTCCGACAGGGATGCCTATAGAGCTGTGTGA 2013 0.458 MGARSALLVRAPAASNNVQLSFTFANIFIALLGILSPCSSYSDAEALLKFRASLRNAVSLSSWDPSINPNPPCSGNITSWVGLYCNQDKVRGLRLESMGLNGNIDIASLSSMPALRMLSLMNNTFAGPLPNIKMLPNLKALYLSFNHFSGDISDDAFAGFSRLKKLYLANNDFTGKIPSSIAALPSLLYLRLDGNKFHGQIPDFPRSNDLMTFNVANNDLEGPIPTNLSTFGPASFSGNKRLCGPPLTNLCPATTGSQDGKEHVMKTIVIVIGVIVVVAILVAVLVIWRLRLKSRDHNRINNHEVPNFQGQTSDKYVPPVYVKTKSLAEHYDAATTPKKVLSSGHSKKVEQGKLIFLNCDSGVKFDLPDLLRASAEILGSNTFGSSYKAVILDGQAVVVKRYKQMNNVPREEFHEHMRRLGNLNHPNILPDMAYYYRKEEKLLISVYVQNGCLASHLHGNRNKEKQGLDWPTRLKIVKGVARGLAYLYNALPSVVAPHGHLKSSNVLLDESFEPLLTDYGLSPLINLDRAQQVIMPYKSPEYAQLGRITRKTDMWSFGILILEILTGKFPENYLAQTHNSDSDIANWVNTMITEKRTSEVFDADMGGFGNSKAELLKLLKIGLSCCEENVERRLDMKEALDQIEDLKEVESDGEYSSTLVTSDRDAYRAV 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152197g00005 670 Gene3D Ribonuclease Inhibitor 208 259 IPR032675 -
Stsc152197g00005 670 Gene3D Phosphorylase Kinase; domain 1 342 447 - -
Stsc152197g00005 670 ProSiteProfiles Protein kinase domain profile. 372 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152197g00005 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 31 651 IPR046959 -
Stsc152197g00005 670 SUPERFAMILY L domain-like 70 240 - -
Stsc152197g00005 670 Pfam Leucine rich repeat N-terminal domain 42 86 IPR013210 -
Stsc152197g00005 670 Gene3D Ribonuclease Inhibitor 38 207 IPR032675 -
Stsc152197g00005 670 Gene3D Transferase(Phosphotransferase) domain 1 448 664 - -
Stsc152197g00005 670 FunFam Pollen receptor-like kinase 1 448 657 - -
Stsc152197g00005 670 FunFam Nuclear pore complex protein NUP107 40 203 - -
Stsc152197g00005 670 Pfam Leucine rich repeat 136 197 IPR001611 GO:0005515
Stsc152197g00005 670 Pfam Protein kinase domain 376 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152197g00005 670 SUPERFAMILY Protein kinase-like (PK-like) 376 645 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152197g00005 Stsc-Chr152197 14359 16809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152197g00005 21 663 Receptor kinase-like Gene Family AT5G35390 46.880 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc152197g00005 Pkinase 3.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152197g00005 - - gmx:100801053 900.582