Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152197g00001 ATGCAATTAGCTTCAAATGGTGACAAGGAGGAGTGTTCAGAATCCGAACCCATCTTGAATCAGCATCTAAATTTGCAATATGGAGGAGGAGGAGGAGAGTCTTCATTTTCATGTGAAATCATTGCTGCTGCTAACGATGATTCACACCCTGTTCCTCTTGATGAGAGCTGTCATCTGGTAAATGCGGATCAGCCACAGTGCCGGATATGCCTTGATATAGGAGGAGAAGATTTGATCGCTCCTTGCCATTGCAAAGGCACGCAAAAGTACGTCCACAGATCATGTCTAGATAATTGGCGGTCTACAAAGG 310 0.4484 MQLASNGDKEECSESEPILNQHLNLQYGGGGGESSFSCEIIAAANDDSHPVPLDESCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTK 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152197g00001 103 SMART ringv_2 66 103 IPR011016 GO:0008270
Stsc152197g00001 103 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 103 - -
Stsc152197g00001 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 103 IPR013083 -
Stsc152197g00001 103 Pfam RING-variant domain 67 102 IPR011016 GO:0008270
Stsc152197g00001 103 SUPERFAMILY RING/U-box 62 102 - -
Stsc152197g00001 103 ProSiteProfiles Zinc finger RING-CH-type profile. 59 103 IPR011016 GO:0008270
Stsc152197g00001 103 CDD RING_CH-C4HC3_MARCH 67 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152197g00001 Stsc-Chr152197 406 1368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152197g00001 54 103 C3H Transcription Factor Family AT1G50440 84.000 5.95e-27 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152197g00001 - - gmx:100789593 169.859