Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152196g00001 ATGAAGAGAATTGGAAGCTCAGATTCTTTGGGGGCTCTCATAACAATTTGTCCATCATCAATAGAGGAGCAGAGTCAGAGGAGCAACCACGTGTACGGTGGTGATCCATTGTTCCAGTCGATGGTGCTGGATGGTCTAGAAGAAGAAGGGTGCACAGTAGAGGAATCCGGTGGGCACCAGTGTGAGAAGAAGCGTAGACTAAGCGTGGAACAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTCAGAACAAGCTTGAACCTGAGAGGAAGGTGAAGTTAGCACAACAAATTGGGTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCTAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGGGTTCTTAAGAACAATTATGAAGTTCTTAAGGTTAAACATGATGCACTCAAAGAGGACAACGATGCCTTGCACAACCAGATGAAGGAATTGAAGACGAGGCTGCAAGAAAGAAACACAGCTAGGGGTATTTCCGTGAAGGAAGAAGAGAAAACAGTGACAGAATCAAAAGATAAATTATTGGTAATGAATGAAGAACACAAGACTGGTGATGAAACCTCAATACTTGGATCAGAATCCAGAGTTAACGATCAATTGTACTGTGACAAGTCCTTCAATGACAACGACGGCCAAGATGTTGTTGCAATAGCATCTCGGCCGCCATCATCACCACCACTCTTTCTTTCTGATTTCAACAAAGATGGTTCCTCGGATAGCGATTCGAGTGCGATCCTAAACGAAGACACCAACAATAACAATTGTAGTAATAGTCCCAAAGATGCAATTTCTTCGCTTCAAAGTAGCCACCACTTCTTGATGTTTTCGGAGTCTTCTCCATTGAAATTCAACGGTTCCATGTTGACCTCTTCGTCTTCCATGAACTGCTTACAATTCCAAAAACCATACCAGAATATGCAATTCGGCGGCGTGAAGATGGAAGAGCACAATTTCATTGGTGGCGCTGACGAGGCATGCAATTTGATCTTCTCCGATGAACCACCACCCACCCTTCATTGGTGCTCTTCAGATAAGTGGGGTTAA 1074 0.4469 MKRIGSSDSLGALITICPSSIEEQSQRSNHVYGGDPLFQSMVLDGLEEEGCTVEESGGHQCEKKRRLSVEQVKALEKNFEVQNKLEPERKVKLAQQIGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYEVLKVKHDALKEDNDALHNQMKELKTRLQERNTARGISVKEEEKTVTESKDKLLVMNEEHKTGDETSILGSESRVNDQLYCDKSFNDNDGQDVVAIASRPPSSPPLFLSDFNKDGSSDSDSSAILNEDTNNNNCSNSPKDAISSLQSSHHFLMFSESSPLKFNGSMLTSSSSMNCLQFQKPYQNMQFGGVKMEEHNFIGGADEACNLIFSDEPPPTLHWCSSDKWG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152196g00001 357 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Stsc152196g00001 357 FunFam homeobox-leucine zipper protein ATHB-6-like 66 112 - -
Stsc152196g00001 357 MobiDBLite consensus disorder prediction 229 267 - -
Stsc152196g00001 357 Coils Coil 131 165 - -
Stsc152196g00001 357 Gene3D - 55 123 - -
Stsc152196g00001 357 CDD homeodomain 63 119 IPR001356 GO:0003677
Stsc152196g00001 357 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Stsc152196g00001 357 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Stsc152196g00001 357 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Stsc152196g00001 357 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 281 IPR045224 GO:0003700
Stsc152196g00001 357 SUPERFAMILY Homeodomain-like 52 120 IPR009057 -
Stsc152196g00001 357 SMART HOX_1 61 122 IPR001356 GO:0003677
Stsc152196g00001 357 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Stsc152196g00001 357 MobiDBLite consensus disorder prediction 240 267 - -
Stsc152196g00001 357 Pfam Homeobox associated leucine zipper 118 160 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152196g00001 Stsc-Chr152196 2666 6205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152196g00001 1 356 Homeobox Transcription Factor Family AT4G40060 41.033 1.12e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc152196g00001 Homeodomain 9.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152196g00001 K09338 - zju:125423848 343.969