Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152189g00003 ATGGGTGGTTCAGGAAAATGGTTTAAATCACTCATATCTCACAGAAAGCCCTCCACCAGCGATCAAAGGGGTGGTGGTGGTGCTGATAAGAGTAAGAAGAAGTGGAAGTTATGGAGAAGTGCTTCAGAAGGGTTTGGTTTTGGGTCCTCGACGAAGAAGGGTGAGGGTTCTCACAAGGCTTTTTCTTCTCTGGTGGATGATGAAGTTGCTTTTAATGCTGCTGTGGCCACAGTGGTGAGAGCACCCCACAAAGATTTCATGGTGATCAAGCAGGAATGGGCTGCTATACGCATTCAAGCCATTTTTAGAGGCTTCTTGGCAAGACGAGCTTTGAGGGCGTTGCGGGCGGTTGTGAGGCTGCAAGCTATATTTCGCGGAAGGCTAGTGAGGAAGCAAGCTGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCACGCGTCCGCGCAAGGAATGTGAGGAACTCTCCAGAAGGGAAAGCTGTGCAGACACTATTGGATCAGTATCGCAACCAAGCTGATCCTATTAAGGAGGCTGAGGACGGATGGTGTGACCTTCCAGGAACTGCAGAGGAAGTTAAAGCAAAACTTCAGATGAGGCAAGAAGGAGCAATTAAGAGAGAAAGAGCAATGGCATACTCAATGTATAACAAGTCAACAGTGTGTGCTAGTCCACGGTCAAGAGCTTCCAGGCCAACCACACCTCTTAGGCAAAGCAGCCTAGACAATAAGAGCTCCCGATCGAGCATGTTGGAGCGCTGGATGGCGACGAAGCCATGGGAGAGCAGGCTAATGGAAGAGACCAATTTCGACTCGCTTGACATGATACCAGTGTCTGGAAAATGTGATGATGTTGCTCCTCCCTTCAATTCACATCAACAAAGAGGCTTCTCCAAAGCAAGAAACAGTGGCATGACAAGAAAAATTTCTTCCAAGTCTCTCACAACCACTCAATCAACTCCATCTTCTTCGGCTGTCAGCTCCGAATGCATGTATGGTGATAGCCCTGGCTCAACCTCATGTACATCTGGATCACTGCCATCGATCAACAATGTTGTTGTGGAGGAAGCAGCAGAGGATAGAAGTGTTAATAAACCAACCTACATGAATCTGACAGAATCAACCAAAGCTAAACTGAAAACTTGCAGGTTTTCTTCGCCGAAATCGAAGAGACTCTTAATGGATGATTGCCACTCTCTTGGCTCAAGAACAGAATTTCTAAATGGAGACAATAGAAGCAGTTGTGGATCATATCCTTCAGTTAATTCGTGGAAGGATCCCTACGCAACACCTTCAAGAGCAAGTTATCAGAAACGATTAAATTCAGACGATAGGTAA 1344 0.4658 MGGSGKWFKSLISHRKPSTSDQRGGGGADKSKKKWKLWRSASEGFGFGSSTKKGEGSHKAFSSLVDDEVAFNAAVATVVRAPHKDFMVIKQEWAAIRIQAIFRGFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQTLLDQYRNQADPIKEAEDGWCDLPGTAEEVKAKLQMRQEGAIKRERAMAYSMYNKSTVCASPRSRASRPTTPLRQSSLDNKSSRSSMLERWMATKPWESRLMEETNFDSLDMIPVSGKCDDVAPPFNSHQQRGFSKARNSGMTRKISSKSLTTTQSTPSSSAVSSECMYGDSPGSTSCTSGSLPSINNVVVEEAAEDRSVNKPTYMNLTESTKAKLKTCRFSSPKSKRLLMDDCHSLGSRTEFLNGDNRSSCGSYPSVNSWKDPYATPSRASYQKRLNSDDR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 293 333 - -
Stsc152189g00003 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 133 IPR027417 -
Stsc152189g00003 447 Gene3D - 91 133 - -
Stsc152189g00003 447 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Stsc152189g00003 447 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Stsc152189g00003 447 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 419 447 - -
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 224 252 - -
Stsc152189g00003 447 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 289 333 - -
Stsc152189g00003 447 PANTHER IQ-DOMAIN 5-RELATED 1 421 - -
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 419 439 - -
Stsc152189g00003 447 SMART iq_5 90 112 IPR000048 GO:0005515
Stsc152189g00003 447 SMART iq_5 113 134 IPR000048 GO:0005515
Stsc152189g00003 447 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152189g00003 Stsc-Chr152189 7681 10234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152189g00003 1 430 IQD Protein Family AT1G72670 42.472 2.87e-89 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152189g00003 - - ahf:112710157 738.799