Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152183g00002 ATGAAAGGGTTTGGGTGTTCATGTGGAGCATGCAAGTACCTAAGGAGAAGGTGCACAAGAGATTGTGTATTTGCTCCATACTTCTCGTACGATGAGGCATCAACCCATTTTGCGGCGGTTCATAAGGTGTTTGGTGCTAGCAACGTCTCTAGGCTGTTGCTACACCTTCCGTTGCACAACAGAAGTGACGCTGCTATCACCATATCTTATCAGGCTCTCGCTCGCATGCATGATCCTATCTATGGTTGTCTTTCTTATATCTATCTATTGCAGCAACAGGTTGCAAGCTTGCATAGGGAGATAGATGATATACTAAGGAAGAATTTCATGATGAAGAATTCATGTTTTGGTTTTGAGAATTATTATGGCAGTGTTCAATCGCCGATGAACACCAACAACGGGATAGAGAATATTATTGTGCAAGAAGGAATTAGTGACGGAGAAAGTAGTAGCAGAATGTATCAAAGCTTATTATCGATGGAGCCAAATAATAATGAATTATTATTTGAAGAACATAATTTATTATATGGTGAGGCAGATCCCATCTCTCTGGAGAAGTTTCTATCGGGAATTGACCAGGATGTGCTCCTTAATCATCCATGGTTCAAGCACAATAATAATAATTAA 627 0.3987 MKGFGCSCGACKYLRRRCTRDCVFAPYFSYDEASTHFAAVHKVFGASNVSRLLLHLPLHNRSDAAITISYQALARMHDPIYGCLSYIYLLQQQVASLHREIDDILRKNFMMKNSCFGFENYYGSVQSPMNTNNGIENIIVQEGISDGESSSRMYQSLLSMEPNNNELLFEEHNLLYGEADPISLEKFLSGIDQDVLLNHPWFKHNNNN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152183g00002 208 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Stsc152183g00002 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 117 - -
Stsc152183g00002 208 Pfam Lateral organ boundaries (LOB) domain 7 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152183g00002 Stsc-Chr152183 14683 15394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152183g00002 1 124 AS2 family AT5G06080 62.097 4.52e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc152183g00002 LOB 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152183g00002 K13945 - gmx:100787638 226.483