Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152172g00002 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTCAAGCGTGGCCGGAAATTGGTCTCTCAAGCCTTTTGGGCCGAGCTTGATCCTTTCTCCGACTTCCTTTCTTTTGACGCCGCCATACCCAACCAGAAGGATCACCTACCACCACCGTCACTTTCTCAAATCCCTGATAACAACAACAAAGTGATAGCATGTGACAAGGTACTAGGAAAGGAAAAAACGGTTGTTGATGGTGCACAAGATAACAGCAAGGGTCATGCATCTAAGAAGGTTCCAAATCAGCGTCAGAGGGTTCGTAAGAACGTGTACAGGGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACACAAGGGCGTCCGTGTCTGGCTCGGCACGTTTAATACGGCCGAGGAGGCTGCTACGGCCTACGACGACGCTGCCAAACGTATCCGTGGAAACAAAGCCAAGCTTAACTTCCCGGACGAGGGCAACGCCGTCGTAGCCCCTCCAGCGGCTAAGAAGCAGTGCCTTAGCAATGAGATGCTGTGTCAGGCTGAAACTGATCCATCTCTCGTGCTAACACCTATTTCTGCCATGCAAACTGGCAGTGATGATGGAAGCATAGAGGGATCGGGATCGGAATCTAATCTGACACAGCAGATCTCGGATCTTGAATGGTTCCTCAGTTTGGAGAATGAGCAACCGTCACAAATAATGGGTGGTGATGCCATTTGGAACAACATTAACAACAACGGTAACATCAACGATAACAATAGCATGGACCTGTGGATGCTGGACGACGTCGTTATGCCCAACCGTTACATGGTGTAA 831 0.5042 MCGGAIISDFIGVKRGRKLVSQAFWAELDPFSDFLSFDAAIPNQKDHLPPPSLSQIPDNNNKVIACDKVLGKEKTVVDGAQDNSKGHASKKVPNQRQRVRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAATAYDDAAKRIRGNKAKLNFPDEGNAVVAPPAAKKQCLSNEMLCQAETDPSLVLTPISAMQTGSDDGSIEGSGSESNLTQQISDLEWFLSLENEQPSQIMGGDAIWNNINNNGNINDNNSMDLWMLDDVVMPNRYMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152172g00002 276 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Stsc152172g00002 276 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Stsc152172g00002 276 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Stsc152172g00002 276 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Stsc152172g00002 276 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Stsc152172g00002 276 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Stsc152172g00002 276 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Stsc152172g00002 276 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Stsc152172g00002 276 PANTHER DNA-BINDING DOMAIN 85 221 IPR044808 GO:0003700|GO:0009873
Stsc152172g00002 276 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152172g00002 Stsc-Chr152172 12521 14922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152172g00002 1 269 AP2-EREBP Transcription Factor Family AT3G16770 40.273 8.88e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc152172g00002 AP2 8.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152172g00002 K09286 - gmx:100817253 231.106