Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152166g00002 ATGAGAAAATGCTCCGATGGTATTATCGATGCCATTATGGGATCCACTGGCATTACTATCTCCAACAGTCATTTCACAGACCACAATGACGTGATGCTCTTTGGTGCCAATGAACAACACACAATTGATAAGGTGATGCAAATCACGCTAGCATTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCGAGGTGCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCAGCCATCCTACTATTATTAGCGAAGGCAATCGCTTTGTAGCTCCCGATAACAACAATGCTAAAGAGGTCACAAAGAGAGTAACCAATGATGACTGGTCAGGCTGGCAATGGAGATCCATAGATGATGAATTTGAGAATGGAGCATTTTTCGTACAATCTGGACCAGAAATGAAAGTCAGGCCATTCGCGCTGAAGGATATGATTACACCAAAGCCTAGTTCATATGTGCAAAGACTTACTCGTAATGCTGGCTCCCTTAAATGTAGGGTTGGTGAACCTTGCTAG 552 0.4239 MRKCSDGIIDAIMGSTGITISNSHFTDHNDVMLFGANEQHTIDKVMQITLAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSSHPTIISEGNRFVAPDNNNAKEVTKRVTNDDWSGWQWRSIDDEFENGAFFVQSGPEMKVRPFALKDMITPKPSSYVQRLTRNAGSLKCRVGEPC 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152166g00002 183 Pfam Pectate lyase 6 101 IPR002022 -
Stsc152166g00002 183 SMART amb_all 1 107 IPR002022 -
Stsc152166g00002 183 Gene3D - 1 176 IPR012334 -
Stsc152166g00002 183 PANTHER PECTATE LYASE 18-RELATED 1 181 IPR045032 GO:0030570
Stsc152166g00002 183 SUPERFAMILY Pectin lyase-like 3 183 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152166g00002 Stsc-Chr152166 18786 19563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152166g00002 1 183 Polysaccharide Lyase AT1G14420 61.579 1.63e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152166g00002 K01728 - gmx:100810857 291.967