Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152166g00001 ATGGAGATTCAGCAAACCTTAAAGTTCATTGTCCACCACCACAACAGAAGAAGAAAAGAAAGCAACAACACACCAAAGCTGAAATGGAGGAACATCTTCTCATCATTCCAAAGATCACCGCCGTCATCAAAACCCACCCAAACTCCACCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGCACCCTAATGGCTGACCCTGTCATCGTATCTTCCGGTCACTCCTTCGAACGATCGTCCGTACAATCATGCAAAGATCTCAACTTTACCCCTCACCTCTCCGATGGAACCACCCCTGATTTCTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCCTCATCCACCCTCCCCCCTCAACCCCCAAACCAGTCCCTCACCGATAAGCTCGTACGGACACTCATCTTCTCTTCATCTTCCTCCCGCGAAAACAACGCAGCGGGAGAGAGAATTCTAACAACGAACCCTTCTTGTTCTTGTTCTTCCTCTTCCTCCGTTGAGTCCATTGCCACGTCAGCATCGAGCTCCACCCCACCCGCTCAACTCACTGCGAAGCCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAATAACGCCAGAAGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAGGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACGAGGACTAATCAAGACTCAAGGATCACACTCTGCACACAACGAATGCTTTCATCTTTGCGTGGCCTCGTTGCTTCCAAGTATAAGATGGTTCAGGTGAACGCCGTAGCGTGCGTCGTCAACCTCTCTCTGGAGAAACCGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTAATAGAAGCTTTGAGGGTGGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTTTGGCGCTTGAAGACGATAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCGCCGCTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACTCGGCATGACTCAGCCTTGGCGCTTTACCATTTGTCGATGGTTCAGAGTAACAGAACCAAATTGGTTAAGATTGGGTCGGTTCCGGTTTTAATTGGGATGGTCAAGTCGGGTCAGATGACGGGTCGAGTCTTGATGATTTTGGGTAATTTGGGTTGCGGGCCGGATGGGCGCTCTGCAATGTTGGATGCGGGTATGGTTGAGTGTTTGGTCGGGTTATTGCCTGGGTCAGGGTTGCTTCATGGATCAACACCGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCTGTGGCGAAGGCGGCAGGAATGGTGGAGGCGCTTGAAAAGGTAGAAAACGGGTTGGGGAATCAACGGGCGAAGGAGAAGGCGCGAAGAGTTTTAGAGATCATGAAGGGTAAAGAAGACGAAGAGGAGGAGGTCGATTGGGAGGAGCTGCTTGACTCCGGTCTAAGTAGCCGAAGTCATGACCAACTGCAGGATAGTGAGTTGGCGGGTTAA 1569 0.5214 MEIQQTLKFIVHHHNRRRKESNNTPKLKWRNIFSSFQRSPPSSKPTQTPPPPEEFICPISGTLMADPVIVSSGHSFERSSVQSCKDLNFTPHLSDGTTPDFSTVIPNLALKSAISKWCHASSTLPPQPPNQSLTDKLVRTLIFSSSSSRENNAAGERILTTNPSCSCSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPITPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNQDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKPNKVRIVRSGLVPPLIEALRVGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRSAMLDAGMVECLVGLLPGSGLLHGSTPESCVAVLYVLSHGGLRFKAVAKAAGMVEALEKVENGLGNQRAKEKARRVLEIMKGKEDEEEEVDWEELLDSGLSSRSHDQLQDSELAG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152166g00001 522 MobiDBLite consensus disorder prediction 508 522 - -
Stsc152166g00001 522 Gene3D - 209 486 IPR011989 -
Stsc152166g00001 522 SUPERFAMILY ARM repeat 213 446 IPR016024 -
Stsc152166g00001 522 SMART arm_5 282 322 IPR000225 GO:0005515
Stsc152166g00001 522 SMART arm_5 323 363 IPR000225 GO:0005515
Stsc152166g00001 522 SMART arm_5 241 281 IPR000225 GO:0005515
Stsc152166g00001 522 SMART arm_5 403 446 IPR000225 GO:0005515
Stsc152166g00001 522 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Stsc152166g00001 522 Pfam U-box domain 52 120 IPR003613 GO:0004842|GO:0016567
Stsc152166g00001 522 MobiDBLite consensus disorder prediction 490 522 - -
Stsc152166g00001 522 FunFam RING-type E3 ubiquitin transferase 210 487 - -
Stsc152166g00001 522 PANTHER U BOX DOMAIN-CONTAINING 34 491 - -
Stsc152166g00001 522 Coils Coil 473 493 - -
Stsc152166g00001 522 Pfam Armadillo/beta-catenin-like repeat 284 321 IPR000225 GO:0005515
Stsc152166g00001 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 125 IPR013083 -
Stsc152166g00001 522 SUPERFAMILY RING/U-box 46 124 - -
Stsc152166g00001 522 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 330 IPR000225 GO:0005515
Stsc152166g00001 522 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152166g00001 Stsc-Chr152166 14709 16913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152166g00001 1 515 U-box Gene Family AT5G40140 52.294 6.70e-169 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152166g00001 - - lja:Lj2g3v1020040.1 583.563