Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152165g00002 ATGCCTAGACGGATCAACAATGATGATGATAACAACAACAACTGTGGAGATAAAGAAGTTGTATCAAAGGAGGAAAGTGGTGAAAAGATTTGTAGAGGGAAAACAAAGAAAGGGCCATGGACACTTTCGGAAGATATAATGTTGAGAGAGTACGTGATGAAGTATGGTGAAGGAAATTGGAACTCTGTGCAAAAGAATTCAGGGTTGGCAAGGTGTGGCAAAAGTTGTAGGCTTAGATGGGCCAATCATCTAAGACCTAATTTGAAGAAAGGTTCATTTTCTAAAGAAGAGGAAGATTTAATTGTGCAACTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCAGCACAGCTACCTGGGAGAACAGATAATGAAATAAAAAACTTTTGGAACACAAGAGTAAAAAGGTGCCAAAGGGCTGGATTACCACTTTATCCACCACAAGTGTTGCATGAAGCCAATGTATATCATCTTCAACAACATCTCAAACCTCAACCTTCATCATCTTCATCATCATCTTTCTCATTTTCTCCATTATTTATATCTTCCTCTAATAATAATAACCACCAAGAAATCAATCAACTCAAGCTAATAAGCCACCCTCCTTCTACAAATAATAATCAACAAAACCCACCCAATTCCTCTTGTTTATCCAATATTAATAATAATCCACAACCATACCCACAATTCAAGTTTCCAATTGAAAACCCTAATAATGCAAATTTAGGGTTCCCATTATCTCCTATTTCCACAACTTCGTCTTTGTTTAACCAAAGTTATCATGTAAATAATAATAACTCAAATGATTATCATTTAGGAAGCTATAACTATAGTTTCCATTCCAATAATCATAATCATAATCATAAAAATGCTATAATAATGCCAAATTCTCCATTTGAAGCACTTCCTCCTTTGATTCAAGGATCAAATAATAATATTAACAATAATAATGAAGCATGTTTAAGCCAATCATCACCACTACCTAGCTCAACAACACCAACTTCATCTTATGCTAGTGGCAATAATGGATACTTAATGGGAGGAAGAGCTTCAAGCATGGCTAACAATGGGGGTGGCTCCGGCCGTGGATCCAATGTTGCACTGCGGGTATCGCCGCCGCCTCAAGAAAATAGTGGTGGATTATTGGGTGCAGTTTTGGTAGAAGCTCAAAGCCGCCTTTGTAACAATAATGACAAGTCTAAGAGTGATAATGAGGATTCAACTGCATCACAGGTTTTATCTCATAAAAGAAAATGCATAGTGACTACTACTGAGGAATGTGCAAAACAAGAAGAGACTAATAACAATAATGTGGTTGTGGAGTCAGATATCAAAAACAATGGAAATAATACTACTAATAATAAAATACAGAAGGTTGATTTGCACTCTTCTCCATTTTCAACAGGGAATAAACAAACTAGTGCTGAGGAAGAATTGGAGATGAATGGCATGGATGATGACTTATTTGGATTACTTAAGAACTTTCAAGAAATGCCAGTTCCAGATTGGTACCACAAAAGAGGACAATCATTGGGACTTGAAACTCATCAACAAGATGCTTCATTATTGGGCTCCATAGATCAAGCATTTTCAACTCATGATAGTTTTTGGAGAAATTAA 1623 0.3635 MPRRINNDDDNNNNCGDKEVVSKEESGEKICRGKTKKGPWTLSEDIMLREYVMKYGEGNWNSVQKNSGLARCGKSCRLRWANHLRPNLKKGSFSKEEEDLIVQLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRVKRCQRAGLPLYPPQVLHEANVYHLQQHLKPQPSSSSSSSFSFSPLFISSSNNNNHQEINQLKLISHPPSTNNNQQNPPNSSCLSNINNNPQPYPQFKFPIENPNNANLGFPLSPISTTSSLFNQSYHVNNNNSNDYHLGSYNYSFHSNNHNHNHKNAIIMPNSPFEALPPLIQGSNNNINNNNEACLSQSSPLPSSTTPTSSYASGNNGYLMGGRASSMANNGGGSGRGSNVALRVSPPPQENSGGLLGAVLVEAQSRLCNNNDKSKSDNEDSTASQVLSHKRKCIVTTTEECAKQEETNNNNVVVESDIKNNGNNTTNNKIQKVDLHSSPFSTGNKQTSAEEELEMNGMDDDLFGLLKNFQEMPVPDWYHKRGQSLGLETHQQDASLLGSIDQAFSTHDSFWRN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152165g00002 540 FunFam Transcription factor GAMYB 92 138 - -
Stsc152165g00002 540 MobiDBLite consensus disorder prediction 199 223 - -
Stsc152165g00002 540 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Stsc152165g00002 540 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Stsc152165g00002 540 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Stsc152165g00002 540 CDD SANT 39 84 IPR001005 -
Stsc152165g00002 540 Gene3D - 92 138 - -
Stsc152165g00002 540 CDD SANT 92 133 IPR001005 -
Stsc152165g00002 540 MobiDBLite consensus disorder prediction 317 341 - -
Stsc152165g00002 540 SMART sant 89 137 IPR001005 -
Stsc152165g00002 540 SMART sant 36 86 IPR001005 -
Stsc152165g00002 540 MobiDBLite consensus disorder prediction 1 21 - -
Stsc152165g00002 540 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Stsc152165g00002 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Stsc152165g00002 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Stsc152165g00002 540 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Stsc152165g00002 540 Gene3D - 36 89 - -
Stsc152165g00002 540 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 520 - -
Stsc152165g00002 540 FunFam MYB-related transcription factor 36 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152165g00002 Stsc-Chr152165 5629 8549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152165g00002 36 181 MYB Transcription Factor Family AT4G26930 69.799 1.25e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc152165g00002 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152165g00002 K09422 - gmx:100784779 332.798