Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152164g00002 ATGGTTCGTCAAGCTGATTTAGTGATTCTTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGTGCCATATTTTTTGGCATAAGGTGGTATAAGAAGCGTGCAAATCTTGGACGATCTGCAAACGAGAATAGTTTAACAACTCTTCCAATTCGAACAAATGGATTGGGAACAAGCACTGACATCAGTGCTTCTATAACTAGTTCCATAGCTCCGTCAAGATCTGACAATGTACAGAAAAATTCTCATTTCAGCTGGTGGAGTAATCAAAGCAAAGATCGTTTTGCTTCAGCGTCGGGCATTCTAAAGTACTCATGTAGAGAAATTCAAAAGGCAACACAAAATTTCACAACTTCATTGGGACAAGGATCATTTGGCACAGTTTATAAAGCCACAATGCCTACAGGGGAAGTGGTAGCTGTGAAGGTTCTTGCACCTAATTCCAAACAAGGCGAGAAAGAATTCCAAACAGAGGTGCTTCTGCTTGGAAGACTGCATCATCGAAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAGCGCATACTTGTCTATCAGTTCATGAGTAATGGAAGTTTAGCTAATCTTTTATATGGTGAAGAAAAACAATTGAGTTGGGATGACCGGCTGCAAGTCGCTCTTGATATTTCACATGGAATAGAGTACCTTCATGAAGGAGCAGTTCCACCTGTCATACATCGCGACTTGAAGTCTGCCAACATATTACTAGATCACTCAATGAGAGCCAAGGTTGCTGACTTCGGACTGTCAAAGGAAGAGATATTTGATGGCCGGAATTCTGGTCTGAAAGGTACTTACGGTTACATGGACCCAGCGTACATTTCAACAAGCAAGTTAACAATGAAGAGTGACATCTACAGTTTCGGCATCATAATATTTGAGCTCATCACTGCCATCCACCCACATCAAAACTTGATGGAGTACATAAACCTTGCTGCTATGGATCACAATGGTGTAGATGAAATTCTTGACAAGCAACTTGTTGGAAAATGCAACCTTGGAGAAGTGAGGCAGCTCGCTAAGATCGCACACAAATGCTTGCACAAATCACCTAAGAAACGCCCTTCGATAAGCGAAGTTTCACAGGGCATATCGAGGATAAGGCAAAGGCGGCTGCGCCATATGATGGAAGCTTCCATGTCATTTGCTAGCAACAACTTTTCAAGAGCTGTTAGTAGATTGGAAGATCGACAACTCGAGCTAAGCAGAATAACCACCATTAGCGTAGGCGAAACTGGATGA 1275 0.4204 MVRQADLVILGVSVGLALGILISCAIFFGIRWYKKRANLGRSANENSLTTLPIRTNGLGTSTDISASITSSIAPSRSDNVQKNSHFSWWSNQSKDRFASASGILKYSCREIQKATQNFTTSLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGQRILVYQFMSNGSLANLLYGEEKQLSWDDRLQVALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDHNGVDEILDKQLVGKCNLGEVRQLAKIAHKCLHKSPKKRPSISEVSQGISRIRQRRLRHMMEASMSFASNNFSRAVSRLEDRQLELSRITTISVGETG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152164g00002 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Stsc152164g00002 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Stsc152164g00002 424 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Stsc152164g00002 424 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Stsc152164g00002 424 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Stsc152164g00002 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Stsc152164g00002 424 SUPERFAMILY Protein kinase-like (PK-like) 87 372 IPR011009 -
Stsc152164g00002 424 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152164g00002 424 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 388 - -
Stsc152164g00002 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Stsc152164g00002 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Stsc152164g00002 424 CDD STKc_IRAK 122 378 - -
Stsc152164g00002 424 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152164g00002 Stsc-Chr152164 6528 11022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152164g00002 86 380 Receptor kinase-like Gene Family AT1G79620 43.548 2.34e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc152164g00002 PK_Tyr_Ser-Thr 9.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152164g00002 - - gmx:100819995 732.635