Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152162g00001 ATGACCTGTTTCCCTTTCATATGTTGTAGGAAGGCAACTTCTGCACCAAAAAGAGATCCAAACATTGATGAAGAGCTTACAGGCATTCAAAATGTGAAACTATATTCTTACAAAGAACTAAAACTTGCCTCTGACGATTTCAGCCCTGTCAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGATTGCTTAAAGGTGGAAATGTTGCAGCTATAAAAGTTCTGTCAGATGAATCAAAACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCAGAAATAAAGCATGAAAATTTGGTTGAGTTATATGGTTGTTGTGTGGAAGGAAATCATAGAATATTAGTCTACAATTACCTTGAGAATAACAGCCTTGCACAAACCCTTCTAGGTGGAGGTCACAGTAGTACCTATTTTAATTGGCGAACTCGAACTCGGATATGCATTGGGGTTGCTCGAGGTCTTGCATTTCTTCATGAGGAAGTAACACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTCGACAAGGACCTCTCACCCAAGATTTCCGATTTCGGTCTTGCAAAGCTTATTCCTTCATACATGACTCATGTAAGCACAAGAGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATCAGGGGGCAGCTGACACGGAAAGCAGATATTTACAGTTTTGGAGTCCTCATTGTTGAGATAGTCAGTGGGAGAAGTAATACAAATACACTGTTACCGAAAGGGAATCAGTATATTCTTGAAATGACATGGGAACTTTATGAGCGGAAGGAATTGGTAGAGCTGGTGGACATGTCACTAAACGGGGAATTTGATGCCGAGGAGGCTTGTAAGTTTCTAAAGATTGGCCTTCTCTGCACTCAGAGTAATCCGAAGATTCGGCCATCCATGTCTTGCATTGTCAAGATGCTCACCGGGGAAATGGATGTCGACGAAAGTAACCTTACAAAACCAGGCTTGATTTCAGACTTTATGGACCTTAAAATTAGAGATCAAAATAGTAATGATATGAAGACTTTGTCATCAAGCAATGTATCCTCTGTATCACACAACCAAGATACCACCATGTCATTAGCTGCTTCAAGTGCTGGAACTACAACGTTCACCGTGAAATATGATCAAAGCTTTTAA 1173 0.4032 MTCFPFICCRKATSAPKRDPNIDEELTGIQNVKLYSYKELKLASDDFSPVNKIGEGGFGSVYKGLLKGGNVAAIKVLSDESKQGVKEFLTEINVISEIKHENLVELYGCCVEGNHRILVYNYLENNSLAQTLLGGGHSSTYFNWRTRTRICIGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLSPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLIVEIVSGRSNTNTLLPKGNQYILEMTWELYERKELVELVDMSLNGEFDAEEACKFLKIGLLCTQSNPKIRPSMSCIVKMLTGEMDVDESNLTKPGLISDFMDLKIRDQNSNDMKTLSSSNVSSVSHNQDTTMSLAASSAGTTTFTVKYDQSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152162g00001 390 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Stsc152162g00001 390 FunFam cold-responsive protein kinase 1 123 334 - -
Stsc152162g00001 390 SMART serkin_6 47 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152162g00001 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Stsc152162g00001 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc152162g00001 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc152162g00001 390 FunFam cold-responsive protein kinase 1 18 122 - -
Stsc152162g00001 390 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152162g00001 390 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Stsc152162g00001 390 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152162g00001 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 357 - -
Stsc152162g00001 390 CDD STKc_IRAK 53 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152162g00001 Stsc-Chr152162 11023 15526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152162g00001 17 337 Receptor kinase-like Gene Family AT1G56120 53.560 4.02e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc152162g00001 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152162g00001 - - gmx:100800503 595.504