Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152153g00001 ATGCCAACCTCACAAGCCGAATTCGTAGAGAATGCTACATTTGTGAAACAAATCGTAACGGTTGATAATAAATATTGGAATGAAAGGGCAGAAATTGCTAGAAAGCTCAGCGAAGAAGCATATTTTCCTGATCCACATGAACTTGCTGGCAACTTCTCCGCTACTATTATGGAAGATCTGGATGGTAGCAAGCAAATAAGAAGGAACTTGAATGGTCTAAAAAAGGATGGACTTCCATGTGAGGCAACCAATCCCATTGACAGATGCTGGAGGTGTGACCCCGATTGGGAAAGCAACCGCCAAAAGCTTGCAGATTGTGTTCAAGGTTTTGGAAGAAAAACTACTGGAGGAAAGGGAGGTCCTATCTATGTAGTCACCGAATCTACAGACAATGACATGGTTAACCCAAAACCAGGTACTATTCGCCACGCAGTGACAAGAAATGGACCTTTGTGGATCATCTTTGATCGTAGTATGAATATTAGACTCAACGAAGAGCTGATGGTGTCTAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTCTACTTTACTAAGGGCGCAGGCATTACAGCCCAATACGTCAATAATGTGATAATCCATGGAATCAAGGTGATGCTCTTTGGTGCCAATGAACAACACACAATTGATAAGGTGATGCAAATCACTCTAGCTTTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCAAGAGCCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCAGTAATCCTACAATTATTAGTGAAGGCAATCGGTTTGTAGCTCCTGATAACGACAATGCTAAAGAGGTCACAAAGAGAGTAACCAATGATGACTGGTCACATTGGCAATGGAGATCCATGGACGATGAGTTTGAGAATGGAGCATTTTTCGTGCAATCTGGACCAGAAATGAAAACTAGACCATTCGCGCTGAAGGATATGATTACTCCAAAGCCTAGTTCATATGTGCAAAGACTTACTCGTAATGCTGGCTCCCTTAAATGTAGAGTCGGTGAACCTTGCTAG 1074 0.419 MPTSQAEFVENATFVKQIVTVDNKYWNERAEIARKLSEEAYFPDPHELAGNFSATIMEDLDGSKQIRRNLNGLKKDGLPCEATNPIDRCWRCDPDWESNRQKLADCVQGFGRKTTGGKGGPIYVVTESTDNDMVNPKPGTIRHAVTRNGPLWIIFDRSMNIRLNEELMVSSNKTIDGRGVDVYFTKGAGITAQYVNNVIIHGIKVMLFGANEQHTIDKVMQITLAFNHFGKRLIQRMPRARYGFVHVVNNDYTHWEMYAIGGSSNPTIISEGNRFVAPDNDNAKEVTKRVTNDDWSHWQWRSMDDEFENGAFFVQSGPEMKTRPFALKDMITPKPSSYVQRLTRNAGSLKCRVGEPC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152153g00001 357 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Stsc152153g00001 357 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Stsc152153g00001 357 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Stsc152153g00001 357 SMART amb_all 158 281 IPR002022 -
Stsc152153g00001 357 Pfam Pectate lyase 197 275 IPR002022 -
Stsc152153g00001 357 SUPERFAMILY Pectin lyase-like 104 357 IPR011050 -
Stsc152153g00001 357 Pfam Pectate lyase, N terminus 24 70 IPR007524 GO:0030570
Stsc152153g00001 357 Gene3D - 204 350 IPR012334 -
Stsc152153g00001 357 Gene3D - 83 203 IPR012334 -
Stsc152153g00001 357 PANTHER PECTATE LYASE 18-RELATED 204 355 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152153g00001 Stsc-Chr152153 5635 8180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152153g00001 15 357 Polysaccharide Lyase AT1G14420 44.804 1.86e-117 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152153g00001 K01728 - qsa:O6P43_025419 358.221