Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152130g00005 ATGTTTTCTAGGCAGTTGCTGAAAATGGAGACACATTATAGGGATTCCTTGTCCTCCCATGGTGTTGCAGGCTCATCTAAGACTTCTTCACTTAAAGTTCCGGAGAAGGTGGGAAGCAGTGCTTGGGGAATACCACACGAGAGTAATGTATTTCATGCTTCTAATGATGTTAGCTTGTTTTCAAGCTCTCTACCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACATTATGGCCAACCTATTGATGATAACTTGCTAACGCTTGATAAAGTGGGCAAAGAGAATGAGGAAAATGATCCTTTCGAAGATTTTGAAGCCAATATAGTTGGAAACATACTTCCTGACGATGAAGAGGAGCTTTTAGCTGGGATAATGGATGACTTTGACCTTAGTAGGTTGCCAAGCCAATTGGAGGATTTAGATGATAATGATCTGTTTGGCAGTGGAGGGGGGTTCGAAATGGACTTTGAACCCCAAGAGAGTCTTAATGTTGGCATGTCAAAGCTAAGCATTTCAGATGGAGTTGCTTCAAATGGTATTGGTCATTATTCAATCCCAAATGGTGTGGGCACGGTAGCTGGTGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGGAAATTATTTGAGCAATTTGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGACATTCGAGATGCTCGCACTGCAATGCGTGCCTTGCAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAGAAAGATATTAACCAAGGAACCCTTGTAGCATTCAATTTGGATCCTTCGGTGTCAAATGAGGACCTTCGGTTAATTTTTGGGGCTTATGGAGAGGTCAAGGAGATTAGGGAAACACCTCATAAGAGGCACCACAAATTTATTGAGTTTTATGATGTAAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGGGACATTGCTGGGAAACGCATAAAACTTGAACCTAGTCGTCCTGGCGGAGCACGTAGAAACTTGATGCAACAACTGAATCAGGAGCTTGAGCAAGATGAAGCTCGAAATTTCAGACATCAAATAGGTTCACCTGTGGCCAATTCTCCTCCCGGTAACTGGCCACATTTTGGTAGTCCAGTTGAGCCTAATCAACTAGGTTCGTTTAGCAAGTCACCTGGTTTGGGTCATGCCAGCCCTATGAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACACGCACCTAACAAGATTGCGCCGATTGGTAAGGATACCGGAAGGGCTGCAAATCAGATATTTGTGAACTCTGGATCAATGCAAGGAACAACTTTTCAGCATTCCATGTCTTTCCCTGAGCAAAAAGTGAGTGCAAGTTCTAGGCCTATATCTTCCTTTGGCGGATCAAGTTCAAGCTCATCAAGTATTGGAACATTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCCTTACACGGAGCATTCAACCACATCTGGTTGGTCTTCTTCTTCTTTGGGGCATCCATTTACTTCTAGTAGCCAAAGGCAGGGTCTCCCGTATACAAGTCATCGCAGTTCTTTTCTTAGTTCCCAGCCCCATCATCATATAGGATCTGCTCCATCTGGTCTTCATTTTGATAGGCATTTTAACTACTTCTCCGAATCCCCCGATGCTTCTCTCCTGAGCCCAGTTGGATTTGGGAATTTAAATCTCAGCGACAGGAGTTTTATAATGAACAGGAGCAGTCGTGCATCTTTAGGGGGTTCTGCTGGCCTTTCAGGAAATACTGCTGAAAATAGTTCACCTAATTTTGGGTTGTTGTCAATGCCTAGGCATGGTTCCTTGTTTCTCGGAAGCAGTTCATATTCTGGGCCAGGTGCAATTAACACTGAAGGATGGGCTGAACGCGGTCGAAGTAGGCGACCTGAGAATATTGGAAACCCAATTGATTCAAAGAAGCTGTACCAACTTGATCTTGATAAAATCCGCAGTGGAGAAGATACAAGGACGACTTTAATGATTAAAAACATTCCTAACAAGTACACATCAAAGATGCTGCTTGCGTCAATTGATGAGAGTCACCGGGGTGCTTATGACTTTCTCTACTTGCCAATTGATTTTAAGGTATATGAATCCAATTATTTATTTTTAACCAAGGACGATGGAGTATTTTGGCCAGGTTGA 2283 0.4275 MFSRQLLKMETHYRDSLSSHGVAGSSKTSSLKVPEKVGSSAWGIPHESNVFHASNDVSLFSSSLPVLPHEKLNLTDSEHYGQPIDDNLLTLDKVGKENEENDPFEDFEANIVGNILPDDEEELLAGIMDDFDLSRLPSQLEDLDDNDLFGSGGGFEMDFEPQESLNVGMSKLSISDGVASNGIGHYSIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRKLFEQFGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVAFNLDPSVSNEDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLNQELEQDEARNFRHQIGSPVANSPPGNWPHFGSPVEPNQLGSFSKSPGLGHASPMNTNHLSGLAAILSPHAPNKIAPIGKDTGRAANQIFVNSGSMQGTTFQHSMSFPEQKVSASSRPISSFGGSSSSSSSIGTLSGPQFLWGSPTPYTEHSTTSGWSSSSLGHPFTSSSQRQGLPYTSHRSSFLSSQPHHHIGSAPSGLHFDRHFNYFSESPDASLLSPVGFGNLNLSDRSFIMNRSSRASLGGSAGLSGNTAENSSPNFGLLSMPRHGSLFLGSSSYSGPGAINTEGWAERGRSRRPENIGNPIDSKKLYQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLASIDESHRGAYDFLYLPIDFKVYESNYLFLTKDDGVFWPG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152130g00005 760 Pfam RNA recognition motif 2 702 741 IPR007201 -
Stsc152130g00005 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 359 IPR000504 GO:0003723
Stsc152130g00005 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 273 IPR000504 GO:0003723
Stsc152130g00005 760 CDD RRM1_MEI2_like 206 282 IPR034453 -
Stsc152130g00005 760 Gene3D - 292 389 IPR012677 -
Stsc152130g00005 760 SUPERFAMILY RNA-binding domain, RBD 204 367 IPR035979 GO:0003676
Stsc152130g00005 760 FunFam MEI2-like protein 5 isoform 2 196 290 - -
Stsc152130g00005 760 PANTHER RNA RECOGNITION MOTIF-CONTAINING 34 727 - -
Stsc152130g00005 760 FunFam Protein MEI2-like 1 291 386 - -
Stsc152130g00005 760 Gene3D - 195 291 IPR012677 -
Stsc152130g00005 760 MobiDBLite consensus disorder prediction 475 507 - -
Stsc152130g00005 760 CDD RRM2_MEI2_like 291 361 - -
Stsc152130g00005 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 280 IPR000504 GO:0003723
Stsc152130g00005 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 365 IPR000504 GO:0003723
Stsc152130g00005 760 SMART rrm1_1 293 361 IPR000504 GO:0003723
Stsc152130g00005 760 SMART rrm1_1 208 276 IPR000504 GO:0003723
Stsc152130g00005 760 MobiDBLite consensus disorder prediction 528 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152130g00005 Stsc-Chr152130 9467 14807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152130g00005 147 400 Eukaryotic Initiation Factors Gene Family AT1G71770 24.382 4.88e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152130g00005 - - gmx:100814765 1141.33