Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152130g00003 ATGGAGACACATTATAGGGATTCCTTGTCCTCCCATGGTGTTGCAGGCTCATCTAAGACTTCTTCACTTAAAGTTCCGGAGAAGGTGGGAAGCAGTGCTTGGGGAATACCACACGAGAGTAATGTATTTCATGCTTCTAATGATGTTAGCTTGTTTTCAAGCTCTCTACCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACATTATGGCCAACCTATTGATGATAACTTGCTAACGCTTGATAAAGTGGGCAAAGAGAATGAGGAAAATGATCCTTTCGAAGATTTTGAAGCCAATATAGTTGGAAACATACTTCCTGACGATGAAGAGGAGCTTTTAGCTGGGATAATGGATGACTTTGACCTTAGTAGGTTGCCAAGCCAATTGGAGGATTTAGATGATAATGATCTGTTTGGCAGTGGAGGGGGGTTCGAAATGGACTTTGAACCCCAAGAGAGTCTTAATGTTGGCATGTCAAAGCTAAGCATTTCAGATGGAGTTGCTTCAAATGGTATTGGTCATTATTCAATCCCAAATGGTGTGGGCACGGTAGCTGGTGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGGAAATTATTTGAGCAATTTGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGACATTCGAGATGCTCGCACTGCAATGCGTGCCTTGCAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAGAAAGATATTAACCAAGGAACCCTTGTAGCATTCAATTTGGATCCTTCGGTGTCAAATGAGGACCTTCGGTTAATTTTTGGGGCTTATGGAGAGGTCAAGGAGATTAGGGAAACACCTCATAAGAGGCACCACAAATTTATTGAGTTTTATGATGTAAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGGGACATTGCTGGGAAACGCATAAAACTTGAACCTAGTCGTCCTGGCGGAGCACGTAGAAACTTGATGCAACAACTGAATCAGGAGCTTGAGCAAGATGAAGCTCGAAATTTCAGACATCAAATAGGTTCACCTGTGGCCAATTCTCCTCCCGGTAACTGGCCACATTTTGGTAGTCCAGTTGAGCCTAATCAACTAGGTTCGTTTAGCAAGTCACCTGGTTTGGGTCATGCCAGCCCTATGAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACACGCACCTAACAAGATTGCGCCGATTGGTAAGGATACCGGAAGGGCTGCAAATCAGATATTTGTGAACTCTGGATCAATGCAAGGAACAACTTTTCAGCATTCCATGTCTTTCCCTGAGCAAAAAGTGAGTGCAAGTTCTAGGCCTATATCTTCCTTTGGCGGATCAAGTTCAAGCTCATCAAGTATTGGAACATTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCCTTACACGGAGCATTCAACCACATCTGGTTGGTCTTCTTCTTCTTTGGGGCATCCATTTACTTCTAGTAGCCAAAGGCAGGGTCTCCCGTATACAAGTCATCGCAGTTCTTTTCTTAGTTCCCAGCCCCATCATCATATAGGATCTGCTCCATCTGGTCTTCATTTTGATAGGCATTTTAACTACTTCTCCGAATCCCCCGATGCTTCTCTCCTGAGCCCAGTTGGATTTGGGAATTTAAATCTCAGCGACAGGAGTTTTATAATGAACAGGAGCAGTCGTGCATCTTTAGGGGGTTCTGCTGGCCTTTCAGGAAATACTGCTGAAAATAGTTCACCTAATTTTGGGTTGTTGTCAATGCCTAGGCATGGTTCCTTGTTTCTCGGAAGCAGTTCATATTCTGGGCCAGGTGCAATTAACACTGAAGGATGGGCTGAACGCGGTCGAAGTAGGCGACCTGAGAATATTGGAAACCCAATTGATTCAAAGAAGCTGTACCAACTTGATCTTGATAAAATCCGCAGTGGAGAAGATACAAGGACGACTTTAATGATTAAAAACATTCCTAACAAGTACACATCAAAGATGCTGCTTGCGTCAATTGATGAGAGTCACCGGGGTGCTTATGACTTTCTCTACTTGCCAATTGATTTTAAGAACAAGTGTAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCTTCACACATCATTCCATTCTATGAGGCATTTAATGGGAAGAGATGGGAGAAGTTTAATAGCGAAAAAGTCGCCTTGCTGGCATATGCAAGGATACAAGGAAAGTCTGCGCTCGTGTCACATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGACTAATGATCAGGAAAATTTTCTATCCAGCAATTTGAATATATGTATTCGCCAACCAGATGGGTCTTACTCAGGTGATTTATTGGAGGAGAGCCCAAAGGGCGATTGGGACGAGAAGCCAGAAAAAGATTAA 2568 0.4287 METHYRDSLSSHGVAGSSKTSSLKVPEKVGSSAWGIPHESNVFHASNDVSLFSSSLPVLPHEKLNLTDSEHYGQPIDDNLLTLDKVGKENEENDPFEDFEANIVGNILPDDEEELLAGIMDDFDLSRLPSQLEDLDDNDLFGSGGGFEMDFEPQESLNVGMSKLSISDGVASNGIGHYSIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRKLFEQFGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVAFNLDPSVSNEDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLNQELEQDEARNFRHQIGSPVANSPPGNWPHFGSPVEPNQLGSFSKSPGLGHASPMNTNHLSGLAAILSPHAPNKIAPIGKDTGRAANQIFVNSGSMQGTTFQHSMSFPEQKVSASSRPISSFGGSSSSSSSIGTLSGPQFLWGSPTPYTEHSTTSGWSSSSLGHPFTSSSQRQGLPYTSHRSSFLSSQPHHHIGSAPSGLHFDRHFNYFSESPDASLLSPVGFGNLNLSDRSFIMNRSSRASLGGSAGLSGNTAENSSPNFGLLSMPRHGSLFLGSSSYSGPGAINTEGWAERGRSRRPENIGNPIDSKKLYQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLASIDESHRGAYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKRWEKFNSEKVALLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGQETNDQENFLSSNLNICIRQPDGSYSGDLLEESPKGDWDEKPEKD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152130g00003 855 CDD RRM1_MEI2_like 198 274 IPR034453 -
Stsc152130g00003 855 Pfam RNA recognition motif 2 694 790 IPR007201 -
Stsc152130g00003 855 SMART rrm1_1 200 268 IPR000504 GO:0003723
Stsc152130g00003 855 SMART rrm1_1 696 772 IPR000504 GO:0003723
Stsc152130g00003 855 SMART rrm1_1 285 353 IPR000504 GO:0003723
Stsc152130g00003 855 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Stsc152130g00003 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Stsc152130g00003 855 MobiDBLite consensus disorder prediction 834 855 - -
Stsc152130g00003 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Stsc152130g00003 855 FunFam Protein MEI2-like 1 283 378 - -
Stsc152130g00003 855 Gene3D - 188 282 IPR012677 -
Stsc152130g00003 855 PANTHER RNA RECOGNITION MOTIF-CONTAINING 28 812 - -
Stsc152130g00003 855 CDD RRM3_MEI2_like 697 782 IPR034454 -
Stsc152130g00003 855 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Stsc152130g00003 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 351 IPR000504 GO:0003723
Stsc152130g00003 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Stsc152130g00003 855 MobiDBLite consensus disorder prediction 467 499 - -
Stsc152130g00003 855 CDD RRM2_MEI2_like 283 353 - -
Stsc152130g00003 855 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Stsc152130g00003 855 MobiDBLite consensus disorder prediction 1 23 - -
Stsc152130g00003 855 Gene3D - 283 381 IPR012677 -
Stsc152130g00003 855 MobiDBLite consensus disorder prediction 520 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152130g00003 Stsc-Chr152130 9467 16395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152130g00003 139 392 Eukaryotic Initiation Factors Gene Family AT1G71770 24.382 9.33e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152130g00003 - - gmx:100814765 1353.58