Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152129g00004 ATGTCTTCTCAAGAACGTGATGTGGTTCACTTCTTCAAGGTTGTTCTTAAAAAAAACCTTCTTGATGATGCTGGATTTCTGAAATTACCAAGGAGTTTTGTGAGTAAATACTGGAAAGGAATTACGTCACGTTATGTTGTTCTAACTCTTCCAAACAGAACTAACTTTGAAGTTTATTGGTTAAGAGACGAAAACGGTGACGTTTTGTTTCGCAACGGTTGGAAGGAGTTTTCACAACACTTGTCTCTTCAAGCGGCACAGTTTCTCTTGTTCCGTTACGAACTGAAAAAATCTAATAATAATTATAACAAGTTTGATGTTGTGGTTTTGAGTTCAAGTGGTTTAGAAATCAAGTATCCTTCTTCTTGTTCTAAGAAAAAGGATGATTATATTAATGTTGATATTGGAAAAGGGCAAAAGGGTCAAAAGAGTAATGGTTGTTCTGTTGAGATTGGTAATGGGAAAAGACAAAGATGCCCCTCACCACCACCACCAAGGCCTCTAGTATTATCTGATGATGATGATGATGATGATGAGACTATTAATTTCAAAAAGATGAAGAGAACTGTAAAAGAAGAGCCTGAAAGCCACTCTCTTGATGCTGAAAAAACTCATATCAATGGCAAGATGAAAGCCTCTAATAATGATGAGTCAGAAGCGTTGGACCCTAAAATCATGAAGAAGTTTCATGAGAAAGTGAAGAAGAAATTCCGGTCTGAGAAGCACTTTTTTGTATGTACAATTGGGAAAACCTACTCTGACAGAGACCTCTTGGTGATACCAAACGATTTTGCTAAACGAATTCTTAGGTATAGAGAAGGAAATGCAAAGCTTGTTGATGGTGCAAATAGATATTGGCAAGTGAAGATTAGACTCGCAGATAGACAACAACTTACAATTACAAGTGGTTGGAAGAAATTCTCAATTGGCCATGGTTTGAAGCTTGGTGATGTTTGTGTCTTTGAGTTGGTTGATCCAATTGATGTTTCTTTCAGAGTTCATATTCATCGTTTTGGACAAGACCATGATGATTTCACTCCTCTCTCTCCTGAATATTCATCAGAGCAAGAAGGACCTAGTTATAGGGCTCCTTGTTCATCACATGTAAAAAAGCATAAAATAGAGAAAGCTAATTCCGGATTCATGCCCAAGAATGAGTTCACCATTCACATCAGCCATGCTACTTTTGCAAATCATTATGCGGTGATACCAATTGAGTCCATGAGGAGTTACGATGTGAGGAGTGGAGCAATTGCAACGTTGCAAGTTGATGGGAGGAGAGAATGGAAGGTGAAATTACTTTATTACCCTCAGAATGGGTATGCTAGATTTTCACAAGGTTGGCCAGATTTTGTTAGGGAATTTCGATTGAAGATTGGTGATTCTTGTCGCTGCGAGCTAATTCATGTCCACAATCTTAAGTTCCGATTTGTAAATGAATTGAAGGGATGGGTTGGTAATGATAAGATTTGGGGAGGGCAGATGATTCCGAAGAGTTTTGTGAGAAAATATTGGAGAATGATATCATCAAATCCTATAGTGCTGAAGCTACCAATAAACAACGTTGAAGAAAAAGTGCATTGGAGTCAAAGGAAGAAAAAAGATCAAGTTTGGTTGGAGAAGGGTTGGGAAAGAGTTGTCAAGTTATGTAACTTGCAATATGAATTTCTATTAACTTTTGATCTCAAAGAAAGTTCAACCTTTGAAATCAAAGTATATGACAAGAGTGCATTACAAATAAACTACCCTTCACATTCTGTATTTCATCATCATCATCAAGAAAATAGTAAAAGCATGGCCAAAGTTATGAAATATGATAATGGAAGAAAGGCACTAGAGAGGGCTGAAGCCATGTGTTCAAATCTGAAAAATCCTTTTTTTGTTCGTGACATGAAACCTTCATATGTTACCGGAAACCTTCTGTTTATACCGTGTTTGTTTGCGAGAAAATACTTGAAAGGATTAAAAGGAAGTGGCAAAATTTGGGTTAGTGATAATGAAGAAGGAAAGAAATGGAACATTAATTACAGTCTTTGTAATGATCGGAAAGGAAGAAGAAGTGCAATCACTGGGGGTTGGACCAAATTTCGTGAGGATAATGAGTTACAAGTTGGTAATGTTTGTGTTTTTGAAATGATGACTCAAAAAGATGATGAACCTCTTTCCTTCAAAGTTCATATCATCAAAGCCACACCACAAGAAAAAGAAACATCATCTCATCCTCATCAATTCCAAGCTGATCAAGAAAACATGGATAATGATGAAGTCAAG 2271 0.3681 MSSQERDVVHFFKVVLKKNLLDDAGFLKLPRSFVSKYWKGITSRYVVLTLPNRTNFEVYWLRDENGDVLFRNGWKEFSQHLSLQAAQFLLFRYELKKSNNNYNKFDVVVLSSSGLEIKYPSSCSKKKDDYINVDIGKGQKGQKSNGCSVEIGNGKRQRCPSPPPPRPLVLSDDDDDDDETINFKKMKRTVKEEPESHSLDAEKTHINGKMKASNNDESEALDPKIMKKFHEKVKKKFRSEKHFFVCTIGKTYSDRDLLVIPNDFAKRILRYREGNAKLVDGANRYWQVKIRLADRQQLTITSGWKKFSIGHGLKLGDVCVFELVDPIDVSFRVHIHRFGQDHDDFTPLSPEYSSEQEGPSYRAPCSSHVKKHKIEKANSGFMPKNEFTIHISHATFANHYAVIPIESMRSYDVRSGAIATLQVDGRREWKVKLLYYPQNGYARFSQGWPDFVREFRLKIGDSCRCELIHVHNLKFRFVNELKGWVGNDKIWGGQMIPKSFVRKYWRMISSNPIVLKLPINNVEEKVHWSQRKKKDQVWLEKGWERVVKLCNLQYEFLLTFDLKESSTFEIKVYDKSALQINYPSHSVFHHHHQENSKSMAKVMKYDNGRKALERAEAMCSNLKNPFFVRDMKPSYVTGNLLFIPCLFARKYLKGLKGSGKIWVSDNEEGKKWNINYSLCNDRKGRRSAITGGWTKFREDNELQVGNVCVFEMMTQKDDEPLSFKVHIIKATPQEKETSSHPHQFQADQENMDNDEVK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152129g00004 757 ProSiteProfiles B3 DNA-binding domain profile. 386 481 IPR003340 GO:0003677
Stsc152129g00004 757 PANTHER B3 DOMAIN-CONTAINING 489 717 - -
Stsc152129g00004 757 CDD B3_DNA 625 729 IPR003340 GO:0003677
Stsc152129g00004 757 MobiDBLite consensus disorder prediction 347 361 - -
Stsc152129g00004 757 Pfam B3 DNA binding domain 244 337 IPR003340 GO:0003677
Stsc152129g00004 757 Pfam B3 DNA binding domain 388 473 IPR003340 GO:0003677
Stsc152129g00004 757 Pfam B3 DNA binding domain 627 725 IPR003340 GO:0003677
Stsc152129g00004 757 SUPERFAMILY DNA-binding pseudobarrel domain 621 730 IPR015300 -
Stsc152129g00004 757 MobiDBLite consensus disorder prediction 732 757 - -
Stsc152129g00004 757 ProSiteProfiles B3 DNA-binding domain profile. 12 113 IPR003340 GO:0003677
Stsc152129g00004 757 SUPERFAMILY DNA-binding pseudobarrel domain 238 337 IPR015300 -
Stsc152129g00004 757 SUPERFAMILY DNA-binding pseudobarrel domain 398 474 IPR015300 -
Stsc152129g00004 757 SUPERFAMILY DNA-binding pseudobarrel domain 493 583 IPR015300 -
Stsc152129g00004 757 MobiDBLite consensus disorder prediction 136 177 - -
Stsc152129g00004 757 SUPERFAMILY DNA-binding pseudobarrel domain 5 109 IPR015300 -
Stsc152129g00004 757 CDD B3_DNA 10 111 IPR003340 GO:0003677
Stsc152129g00004 757 ProSiteProfiles B3 DNA-binding domain profile. 243 339 IPR003340 GO:0003677
Stsc152129g00004 757 Gene3D - 604 732 IPR015300 -
Stsc152129g00004 757 Gene3D - 367 479 IPR015300 -
Stsc152129g00004 757 Gene3D - 225 339 IPR015300 -
Stsc152129g00004 757 MobiDBLite consensus disorder prediction 346 365 - -
Stsc152129g00004 757 CDD B3_DNA 402 477 IPR003340 GO:0003677
Stsc152129g00004 757 CDD B3_DNA 241 337 IPR003340 GO:0003677
Stsc152129g00004 757 Gene3D - 487 577 IPR015300 -
Stsc152129g00004 757 Gene3D - 2 114 IPR015300 -
Stsc152129g00004 757 SMART B3_2 387 481 IPR003340 GO:0003677
Stsc152129g00004 757 SMART B3_2 627 731 IPR003340 GO:0003677
Stsc152129g00004 757 SMART B3_2 11 113 IPR003340 GO:0003677
Stsc152129g00004 757 SMART B3_2 487 576 IPR003340 GO:0003677
Stsc152129g00004 757 SMART B3_2 244 339 IPR003340 GO:0003677
Stsc152129g00004 757 ProSiteProfiles B3 DNA-binding domain profile. 626 731 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152129g00004 Stsc-Chr152129 14764 20140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152129g00004 594 717 B3 DNA Binding Superfamily AT3G18990 29.600 3.24e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152129g00004 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152129g00004 - - ahf:112717071 402.134