LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc152129g00004	ATGTCTTCTCAAGAACGTGATGTGGTTCACTTCTTCAAGGTTGTTCTTAAAAAAAACCTTCTTGATGATGCTGGATTTCTGAAATTACCAAGGAGTTTTGTGAGTAAATACTGGAAAGGAATTACGTCACGTTATGTTGTTCTAACTCTTCCAAACAGAACTAACTTTGAAGTTTATTGGTTAAGAGACGAAAACGGTGACGTTTTGTTTCGCAACGGTTGGAAGGAGTTTTCACAACACTTGTCTCTTCAAGCGGCACAGTTTCTCTTGTTCCGTTACGAACTGAAAAAATCTAATAATAATTATAACAAGTTTGATGTTGTGGTTTTGAGTTCAAGTGGTTTAGAAATCAAGTATCCTTCTTCTTGTTCTAAGAAAAAGGATGATTATATTAATGTTGATATTGGAAAAGGGCAAAAGGGTCAAAAGAGTAATGGTTGTTCTGTTGAGATTGGTAATGGGAAAAGACAAAGATGCCCCTCACCACCACCACCAAGGCCTCTAGTATTATCTGATGATGATGATGATGATGATGAGACTATTAATTTCAAAAAGATGAAGAGAACTGTAAAAGAAGAGCCTGAAAGCCACTCTCTTGATGCTGAAAAAACTCATATCAATGGCAAGATGAAAGCCTCTAATAATGATGAGTCAGAAGCGTTGGACCCTAAAATCATGAAGAAGTTTCATGAGAAAGTGAAGAAGAAATTCCGGTCTGAGAAGCACTTTTTTGTATGTACAATTGGGAAAACCTACTCTGACAGAGACCTCTTGGTGATACCAAACGATTTTGCTAAACGAATTCTTAGGTATAGAGAAGGAAATGCAAAGCTTGTTGATGGTGCAAATAGATATTGGCAAGTGAAGATTAGACTCGCAGATAGACAACAACTTACAATTACAAGTGGTTGGAAGAAATTCTCAATTGGCCATGGTTTGAAGCTTGGTGATGTTTGTGTCTTTGAGTTGGTTGATCCAATTGATGTTTCTTTCAGAGTTCATATTCATCGTTTTGGACAAGACCATGATGATTTCACTCCTCTCTCTCCTGAATATTCATCAGAGCAAGAAGGACCTAGTTATAGGGCTCCTTGTTCATCACATGTAAAAAAGCATAAAATAGAGAAAGCTAATTCCGGATTCATGCCCAAGAATGAGTTCACCATTCACATCAGCCATGCTACTTTTGCAAATCATTATGCGGTGATACCAATTGAGTCCATGAGGAGTTACGATGTGAGGAGTGGAGCAATTGCAACGTTGCAAGTTGATGGGAGGAGAGAATGGAAGGTGAAATTACTTTATTACCCTCAGAATGGGTATGCTAGATTTTCACAAGGTTGGCCAGATTTTGTTAGGGAATTTCGATTGAAGATTGGTGATTCTTGTCGCTGCGAGCTAATTCATGTCCACAATCTTAAGTTCCGATTTGTAAATGAATTGAAGGGATGGGTTGGTAATGATAAGATTTGGGGAGGGCAGATGATTCCGAAGAGTTTTGTGAGAAAATATTGGAGAATGATATCATCAAATCCTATAGTGCTGAAGCTACCAATAAACAACGTTGAAGAAAAAGTGCATTGGAGTCAAAGGAAGAAAAAAGATCAAGTTTGGTTGGAGAAGGGTTGGGAAAGAGTTGTCAAGTTATGTAACTTGCAATATGAATTTCTATTAACTTTTGATCTCAAAGAAAGTTCAACCTTTGAAATCAAAGTATATGACAAGAGTGCATTACAAATAAACTACCCTTCACATTCTGTATTTCATCATCATCATCAAGAAAATAGTAAAAGCATGGCCAAAGTTATGAAATATGATAATGGAAGAAAGGCACTAGAGAGGGCTGAAGCCATGTGTTCAAATCTGAAAAATCCTTTTTTTGTTCGTGACATGAAACCTTCATATGTTACCGGAAACCTTCTGTTTATACCGTGTTTGTTTGCGAGAAAATACTTGAAAGGATTAAAAGGAAGTGGCAAAATTTGGGTTAGTGATAATGAAGAAGGAAAGAAATGGAACATTAATTACAGTCTTTGTAATGATCGGAAAGGAAGAAGAAGTGCAATCACTGGGGGTTGGACCAAATTTCGTGAGGATAATGAGTTACAAGTTGGTAATGTTTGTGTTTTTGAAATGATGACTCAAAAAGATGATGAACCTCTTTCCTTCAAAGTTCATATCATCAAAGCCACACCACAAGAAAAAGAAACATCATCTCATCCTCATCAATTCCAAGCTGATCAAGAAAACATGGATAATGATGAAGTCAAG	2271	0.3681	MSSQERDVVHFFKVVLKKNLLDDAGFLKLPRSFVSKYWKGITSRYVVLTLPNRTNFEVYWLRDENGDVLFRNGWKEFSQHLSLQAAQFLLFRYELKKSNNNYNKFDVVVLSSSGLEIKYPSSCSKKKDDYINVDIGKGQKGQKSNGCSVEIGNGKRQRCPSPPPPRPLVLSDDDDDDDETINFKKMKRTVKEEPESHSLDAEKTHINGKMKASNNDESEALDPKIMKKFHEKVKKKFRSEKHFFVCTIGKTYSDRDLLVIPNDFAKRILRYREGNAKLVDGANRYWQVKIRLADRQQLTITSGWKKFSIGHGLKLGDVCVFELVDPIDVSFRVHIHRFGQDHDDFTPLSPEYSSEQEGPSYRAPCSSHVKKHKIEKANSGFMPKNEFTIHISHATFANHYAVIPIESMRSYDVRSGAIATLQVDGRREWKVKLLYYPQNGYARFSQGWPDFVREFRLKIGDSCRCELIHVHNLKFRFVNELKGWVGNDKIWGGQMIPKSFVRKYWRMISSNPIVLKLPINNVEEKVHWSQRKKKDQVWLEKGWERVVKLCNLQYEFLLTFDLKESSTFEIKVYDKSALQINYPSHSVFHHHHQENSKSMAKVMKYDNGRKALERAEAMCSNLKNPFFVRDMKPSYVTGNLLFIPCLFARKYLKGLKGSGKIWVSDNEEGKKWNINYSLCNDRKGRRSAITGGWTKFREDNELQVGNVCVFEMMTQKDDEPLSFKVHIIKATPQEKETSSHPHQFQADQENMDNDEVK	757

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc152129g00004	757	ProSiteProfiles	B3 DNA-binding domain profile.	386	481	IPR003340	GO:0003677
Stsc152129g00004	757	PANTHER	B3 DOMAIN-CONTAINING	489	717	-	-
Stsc152129g00004	757	CDD	B3_DNA	625	729	IPR003340	GO:0003677
Stsc152129g00004	757	MobiDBLite	consensus disorder prediction	347	361	-	-
Stsc152129g00004	757	Pfam	B3 DNA binding domain	244	337	IPR003340	GO:0003677
Stsc152129g00004	757	Pfam	B3 DNA binding domain	388	473	IPR003340	GO:0003677
Stsc152129g00004	757	Pfam	B3 DNA binding domain	627	725	IPR003340	GO:0003677
Stsc152129g00004	757	SUPERFAMILY	DNA-binding pseudobarrel domain	621	730	IPR015300	-
Stsc152129g00004	757	MobiDBLite	consensus disorder prediction	732	757	-	-
Stsc152129g00004	757	ProSiteProfiles	B3 DNA-binding domain profile.	12	113	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc152129g00004	Stsc-Chr152129	14764	20140	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc152129g00004	594	717	B3 DNA Binding Superfamily	AT3G18990	29.600	3.24e-11	63.9

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Stsc152129g00004		B3	3.3e-16	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc152129g00004	-		-	ahf:112717071	402.134

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