Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152129g00003 ATGGCTCCTCGTCATCAACAAGGTGATCCAGCTACTACTGTTGTCAGGTTCTTCAAGATCATTTGTCATTGGCATATCCGAGATGAGAAGATTAAGCTTCCAACTGAATTCACAAAAAAATGTGGATTGAAACTCCCAAATCCGGTGACTTTGAAAGTTACAGATGGCAGCAAAAAGAAAGTGCATTGGACCAAAATTAATGGTGCAATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTGCCATGGCCACCTTATGTTGTTCAAATATTGTGTTGTTGCTTCATACTTTGAGGTCCAAATATTTGACAACACCACTCTTGAAATTGAGTACCCTAATCAGCCTGATGAACCCCATTTTGATGATCTTGAAGATGATGATGACTCTGATTATGATAATGATAACGATGATGATGATGATTATGTTGATAATGTGAAGGTTCATAAATATGATGAATATCAATGGAAAGACACAAGTGAAAGTTCTGCTGATGCTGATGCTAGAAGAAGAGAGTTACCAACAGAGAGAAAAACTAACAACCCAAGTTTTGAGGTTGTGATGCAAGATTCATATATCAATGGAGGAAGATGCATGGCTATTCCATCTGGTTTTGCAAGGGAGTACATGAAGGAAGGAGATTACCTTCTGAAAGTGGTGGGAAGTGGGAGGACATGGAAAGTGATGTTCAAGACATGGTGTGGATATGGAATGCCTTACAAGAAGTACAAATTGCAAAAGGGTTGGGCCAAGTTTAGCCAAGGGAACAACTTAGAGAAGAATGATGTCTGTGTTTTTGAGCTCATTCCCAACACCACCATACCAACCTTCAATGTTCTCATTCAACGTAATCACAGTGGTAGAAGCTATTGA 888 0.393 MAPRHQQGDPATTVVRFFKIICHWHIRDEKIKLPTEFTKKCGLKLPNPVTLKVTDGSKKKVHWTKINGAIWFIGKEWKEFLEHYSVCHGHLMLFKYCVVASYFEVQIFDNTTLEIEYPNQPDEPHFDDLEDDDDSDYDNDNDDDDDYVDNVKVHKYDEYQWKDTSESSADADARRRELPTERKTNNPSFEVVMQDSYINGGRCMAIPSGFAREYMKEGDYLLKVVGSGRTWKVMFKTWCGYGMPYKKYKLQKGWAKFSQGNNLEKNDVCVFELIPNTTIPTFNVLIQRNHSGRSY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152129g00003 295 MobiDBLite consensus disorder prediction 165 183 - -
Stsc152129g00003 295 Gene3D - 11 112 IPR015300 -
Stsc152129g00003 295 ProSiteProfiles B3 DNA-binding domain profile. 189 290 IPR003340 GO:0003677
Stsc152129g00003 295 CDD B3_DNA 187 285 IPR003340 GO:0003677
Stsc152129g00003 295 CDD B3_DNA 16 109 IPR003340 GO:0003677
Stsc152129g00003 295 MobiDBLite consensus disorder prediction 118 147 - -
Stsc152129g00003 295 MobiDBLite consensus disorder prediction 125 146 - -
Stsc152129g00003 295 Pfam B3 DNA binding domain 189 286 IPR003340 GO:0003677
Stsc152129g00003 295 SMART B3_2 17 111 IPR003340 GO:0003677
Stsc152129g00003 295 SMART B3_2 189 288 IPR003340 GO:0003677
Stsc152129g00003 295 SUPERFAMILY DNA-binding pseudobarrel domain 184 282 IPR015300 -
Stsc152129g00003 295 Gene3D - 165 291 IPR015300 -
Stsc152129g00003 295 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Stsc152129g00003 295 PANTHER B3 DOMAIN-CONTAINING 16 277 - -
Stsc152129g00003 295 MobiDBLite consensus disorder prediction 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152129g00003 Stsc-Chr152129 10008 11470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152129g00003 4 149 B3 DNA Binding Superfamily AT1G49475 35.135 1.62e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152129g00003 B3 4.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152129g00003 - - ahf:112784208 387.497