Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152129g00002 ATGACTTTCCATGAAAGAGGTTTCTTTAAGATACTTGTACATAACTTTCAGCATGAGTTGAAAATTCCTGAACGTTTTGTGAGGGAATCTTGGAAAGGATTATCAAATCCTATAGTGCTAAAGCTACCAAACAATGCTGAACAAAGAGTACATTGGATTCAAAGGAATGAAGATCAAATCTGGTTGAAACAAGGTTGGGCACAAGTTGCGGAGGGTTTTGGCTTTGAATATGCTCAGTTTTTGACATTTGACTATAAAGGAAGGTCTTGCTTTGAAGTCAAAATATATCACAAGACTAGTTCTGAAACATTGCCCCCTCATAATCAAAGATGTTTCTTTCAGATTCTTGTTCACAGCAAGTTTCACCAAAAGCTGATGGTTCCTAAGTGTTTTTCAAATGAATATTGGAAAAAAATGTCAAACCCTATAAAGTTGGAGTTACCAGATGGGGTTGAGAAGAAGGTGAATTGGAGCAAAAGAGGAGAAACTATTTGGTTGGAACAAGGTTGGGAGAAAGTTGTGGAGTTGTGTGGTTTGTGTTATGAGTGGTTGTTGACTTTTGACTACAAAGGAAGGTCTTGTTTTGAAGTCAAAGTATATGATAACACTGCTTTAAGGGTTGCTTATTATAACATTCATGAGAATAACAACAACAACAACAAAGATGGTGAAGAAACTGTGACTGATGATGATGATGATGATGAAGATGATGAAGACTTTGTTGATGGTGATGATTATTGTGAAGTTGAGAGTGAGAGGAGTAGTGATTATGATGATGATGATGATGATGAATTTGATGAGTTTGATCAACAATATTTCAGAAGAAACAAGACTCACTCAGGAATCCCAGATTCAAGATTCGAATGCGAGAATCATATGTTGGGGGAAGATGCGTGGCAATACCATCAAAATTTGCAAGGAAGCATTTGA 930 0.3645 MTFHERGFFKILVHNFQHELKIPERFVRESWKGLSNPIVLKLPNNAEQRVHWIQRNEDQIWLKQGWAQVAEGFGFEYAQFLTFDYKGRSCFEVKIYHKTSSETLPPHNQRCFFQILVHSKFHQKLMVPKCFSNEYWKKMSNPIKLELPDGVEKKVNWSKRGETIWLEQGWEKVVELCGLCYEWLLTFDYKGRSCFEVKVYDNTALRVAYYNIHENNNNNNKDGEETVTDDDDDDEDDEDFVDGDDYCEVESERSSDYDDDDDDEFDEFDQQYFRRNKTHSGIPDSRFECENHMLGEDAWQYHQNLQGSI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152129g00002 309 Gene3D - 104 204 IPR015300 -
Stsc152129g00002 309 Gene3D - 2 100 IPR015300 -
Stsc152129g00002 309 SMART B3_2 112 203 IPR003340 GO:0003677
Stsc152129g00002 309 SMART B3_2 8 99 IPR003340 GO:0003677
Stsc152129g00002 309 MobiDBLite consensus disorder prediction 215 242 - -
Stsc152129g00002 309 SUPERFAMILY DNA-binding pseudobarrel domain 107 202 IPR015300 -
Stsc152129g00002 309 SUPERFAMILY DNA-binding pseudobarrel domain 6 98 IPR015300 -
Stsc152129g00002 309 MobiDBLite consensus disorder prediction 225 242 - -
Stsc152129g00002 309 PANTHER B3 DOMAIN-CONTAINING 6 103 - -
Stsc152129g00002 309 Pfam B3 DNA binding domain 112 201 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152129g00002 Stsc-Chr152129 6319 8717 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152129g00002 105 247 B3 DNA Binding Superfamily AT1G49475 27.815 8.48e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152129g00002 B3 2.7e-07 CL0405