Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152129g00001 ATGGCGATTCCTCGGGACTTCGAGCCAGATGAAGAAACTCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGGTCATTATAAAGCCGAGTTTTCTGGGGGATCGCAGACCGTGTATCCCACTTTTCTTGGTAAAAAATTACCTCCAAAAAACTCATATTGTGACATTTAAGTTTGGAGGGGGAGCGTGGCGTCTCAAGTTTCTGCATTACACAAAATACAAAACTGCAGTAAAGTTTTCCACTGGTTGGGGGCCATTTTGTAGAGAATGTAAATTGAAAGCAAGAGATGTTTGTATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCAAATCTAG 372 0.3978 MAIPRDFEPDEETLKEAKKFTSENPFFMVIIKPSFLGDRRPCIPLFLVKNYLQKTHIVTFKFGGGAWRLKFLHYTKYKTAVKFSTGWGPFCRECKLKARDVCIFELINKEDAVFDVHLFRCQI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152129g00001 123 CDD B3_DNA 25 120 IPR003340 GO:0003677
Stsc152129g00001 123 ProSiteProfiles B3 DNA-binding domain profile. 26 122 IPR003340 GO:0003677
Stsc152129g00001 123 Pfam B3 DNA binding domain 26 120 IPR003340 GO:0003677
Stsc152129g00001 123 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 120 IPR044837 -
Stsc152129g00001 123 SUPERFAMILY DNA-binding pseudobarrel domain 20 120 IPR015300 -
Stsc152129g00001 123 Gene3D - 8 122 IPR015300 -
Stsc152129g00001 123 SMART B3_2 26 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152129g00001 Stsc-Chr152129 1165 1758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152129g00001 8 122 REM Transcription Factor Family AT1G49480 34.167 3.06e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152129g00001 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152129g00001 - - adu:107471690 187.193