Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152128g00001 ATGGGCAATTGTTGCTCCCAAGGCAACGCCGCAGATGCCCCGGAGGCCGACGCCGCGGCGGCCACCGCAAACAAGGGAGAGTCGAACAACCAAGAAAATACAAACAATAATGGAAATAGCGATAACGACAAAAATAAAAGCCCATCTGAAAGCCCTCCAGCAACGAAACCTCCACCTACATCAAAGCCACCACCCTCAACCACATCTCCTCCATCAACAGCAAAGCCTTCAAAGCCAGGCCCAATAGGGCCTGTCCTTGGAAGGCCAATGGAGGACATCAAAGCCACGTATAGTTTGGGTAAGGAATTAGGTAGAGGCATGTTTGGGGTAACATATTTATGCACCCACAAGGCCACAGGGAAACAATTTGCATGCAAAACCATTGCTAAGAGGAAGCTAGTAAATAAGGAGGATATTGAAGATGTTAGGAGGGAGGTGCAAATCTTATACCATCTCTCAGGGCAACCTAACATCGTAGAGCTTAAAGGTGCATATGAGGACAAACAATCTGTTCATTTAGTTATGGAATTGTGTGCGGGTGGTGAGCTCTTTGATCGTATCATTGCCAAGGGCCATTACACCGAGCGTGCTGCTGCTACCTTGTTAAGAACCATCATGGAGATTGTCCATACCTTCCACTCTCTTGGTGTCATTCATAGAGATCTCAAACCTGAGAATTTTCTCTTGTTGAGCAAGGACGAAGATGCGCCCCTTAAAGCCACGGATTTTGGTTTATCCGTTTTTTACAAGCAAGGGGATGTTTTCAAAGACATTGTTGGTAGTGCTTACTACATTGCACCTGAAGTCTTGAAAAGGAAATATGGCCCAGAAGTTGACATATGGAGTGTTGGTGTTATGCTATACATTCTTTTATGTGGGGTTCCTCCATTTTGGGCAGAATCTGAACATGGCATATTCAATGCCATCCTTAGAGGTCACATAGACTTTTCAAGCGACCCATGGCCTTCAATTTCACCATCAGCAAAAGATCTTGTACGGAAAATGTTGAATTCAGATCCTAAACAAAGGCTTACAGCTTATGAAGTTTTGAATCATCCTTGGGTTAAGGAAGACGGAGAAGCACCCGATAAGCCTATTGATAATGCTGTGCTAAATAGGCTCAAACAATTCAAAGCAATGAATGAATTCAAGAAAGTTGCTTTAAGGGTTATTGCAGGATGTTTATCAGAAGAAGAAATCATGGGGTTAAAGGAAATGTTTAAGGGAATGGACACTGATAATAGTGGAACCATTACAATTGAAGAACTCAAGCAAGGGCTTGCAAAGCAGGGGACAAAGCTATCAGAACAAGAAGTTCAACAATTACTTGAAGCAGCAGATGCTGATGGGAATGGTACCATAGACTATGATGAATTCATCACAGCAACAGTTCATATGAATAGAATGAACAGAGAAGAGCATCTTTATAAAGCCTTCCAATACTTTGATAAAGATAACAGCGGCTTTATCACCACTGAAGAATTAGAGCAAGCTCTCCATGAATATAACATCCACGATGGGAGAGACATCAATGAAATTGTTCAAGAAGTTGACGTAGATAATGATGGTCGTATTAACTATGAAGAGTTTGTGGCGATGATGAGAAAAGGACAAGTTGATGCTCATACAAAAAAGAGGCGTGAATCACTCAATTTGCATGGGTAG 1665 0.424 MGNCCSQGNAADAPEADAAAATANKGESNNQENTNNNGNSDNDKNKSPSESPPATKPPPTSKPPPSTTSPPSTAKPSKPGPIGPVLGRPMEDIKATYSLGKELGRGMFGVTYLCTHKATGKQFACKTIAKRKLVNKEDIEDVRREVQILYHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAATLLRTIMEIVHTFHSLGVIHRDLKPENFLLLSKDEDAPLKATDFGLSVFYKQGDVFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFSSDPWPSISPSAKDLVRKMLNSDPKQRLTAYEVLNHPWVKEDGEAPDKPIDNAVLNRLKQFKAMNEFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVQQLLEAADADGNGTIDYDEFITATVHMNRMNREEHLYKAFQYFDKDNSGFITTEELEQALHEYNIHDGRDINEIVQEVDVDNDGRINYEEFVAMMRKGQVDAHTKKRRESLNLHG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152128g00001 554 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152128g00001 554 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Stsc152128g00001 554 Gene3D Transferase(Phosphotransferase) domain 1 183 362 - -
Stsc152128g00001 554 Pfam EF-hand domain pair 472 535 IPR002048 GO:0005509
Stsc152128g00001 554 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Stsc152128g00001 554 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Stsc152128g00001 554 MobiDBLite consensus disorder prediction 23 50 - -
Stsc152128g00001 554 FunFam Calcium-dependent protein kinase 1 99 182 - -
Stsc152128g00001 554 Gene3D - 363 543 - -
Stsc152128g00001 554 FunFam calcium-dependent protein kinase 1 183 362 - -
Stsc152128g00001 554 SMART efh_1 438 466 IPR002048 GO:0005509
Stsc152128g00001 554 SMART efh_1 509 537 IPR002048 GO:0005509
Stsc152128g00001 554 SMART efh_1 402 430 IPR002048 GO:0005509
Stsc152128g00001 554 SMART efh_1 474 502 IPR002048 GO:0005509
Stsc152128g00001 554 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Stsc152128g00001 554 SUPERFAMILY Protein kinase-like (PK-like) 96 359 IPR011009 -
Stsc152128g00001 554 MobiDBLite consensus disorder prediction 1 89 - -
Stsc152128g00001 554 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Stsc152128g00001 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 91 530 - -
Stsc152128g00001 554 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Stsc152128g00001 554 ProSitePatterns Protein kinases ATP-binding region signature. 103 130 IPR017441 GO:0005524
Stsc152128g00001 554 SUPERFAMILY EF-hand 395 535 IPR011992 -
Stsc152128g00001 554 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152128g00001 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Stsc152128g00001 554 FunFam Calcium-dependent protein kinase 1 363 538 - -
Stsc152128g00001 554 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Stsc152128g00001 554 MobiDBLite consensus disorder prediction 51 78 - -
Stsc152128g00001 554 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Stsc152128g00001 554 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Stsc152128g00001 554 CDD STKc_CAMK 97 354 - -
Stsc152128g00001 554 ProSiteProfiles EF-hand calcium-binding domain profile. 509 540 IPR002048 GO:0005509
Stsc152128g00001 554 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152128g00001 Stsc-Chr152128 2731 6661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152128g00001 1 548 EF-hand Containing Proteins AT5G12180 77.372 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc152128g00001 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152128g00001 K13412 - gmx:100781355 891.723