Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152117g00002 ATGGAATCTTCTTGGGGTTATGTTACTGAAGAAGAAAAGGGGTATGTCTCAAACGATTCTCTTTCTGCTGCTCCTCCTAGTTCCCTTGTGAGAAGCAGAAGTTCCTTCCTTGGATGGGAACTCAAAACCCCATCTTCTAGCTTTGACAATCAATGTTTTGAGGAGCTTGGTTTCCCTGAATTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGCAGAATCACTAGTAGTAGTAGTAATAGCACTACTACCACTGTTATGGATTCTAGTAGTGGCCGTGATTCCCTCATTGACTTGAAGCTTGGAAGGTTTGGTGATCATGGTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCGGTTCTGTGTTCTTCTGTGTCGTCGACGGCGCCGAAGAGACCCCGAGCCTCTTCGGGTTTGCACTCGCAGACTGCTTACTGTCAAGTGTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTGCTGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGACGATGGTAAGCGCAGCTGTCGCAAACGCCTCGCAGGACATAACGAGCGGCGAAGAAAACCGCAAGCAGATAGCAGATTCCAGGGGACCATGCTATCATCAGCATCTTTTATGTCCTCAGATTCGGATAAACACGGAATGAGTGGCTTCTGGAGACCCGGTAAAGCAGAACATGGGTCTGGTTTTTGGCATCCTCAGAACTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCAGGAAAGCGGTGCTCCTACAACAACCAGTGAAAGCATCTTCTATGAAAACAGTAACCACTATAAGCCTGTCCTTGCGGCCCAGCATTCGGGGTCTAGACCACTATTTCAGAACACCTCCTTGGGAAGCGAGGACTTCAATGTTTTCGATACATCATCAACTGTTCAAGGACTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAATCGTCAGGAATTCCCTTTGTTCACCCCATGGTTAGTCCAAGCAGCCATGGACAACATTGCAGCATAAGTGAGGTCTCCGAAAAGATAGGAATGAGCTCACAAACTTCTTCGTGCCGAGTGTATGATAGGTTTCCGTCGTCATTGAATCCTGCAACTGGAAGCCAGCTTAGTCCTATACTTATATCGGGCAACAACAATATTGTCAACTTCGAAATGGCGGATCGGATTTTCCAAGGTTCAGACTTCGTTAATGCTAGAGATCATCTTTCCTGTGAAGATGGAGCAACAATTGACTTGCTACAGCTTTCATCGCAGCTTCAGCGGGTCGAGCATCAAAGGCAATCCTTGCAGGTCAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1506 0.4555 MESSWGYVTEEEKGYVSNDSLSAAPPSSLVRSRSSFLGWELKTPSSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSSNSTTTTVMDSSSGRDSLIDLKLGRFGDHGDVNVASFSKGAPVLCSSVSSTAPKRPRASSGLHSQTAYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQADSRFQGTMLSSASFMSSDSDKHGMSGFWRPGKAEHGSGFWHPQNSRSLFPSYNGKQFPFLQESGAPTTTSESIFYENSNHYKPVLAAQHSGSRPLFQNTSLGSEDFNVFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPFVHPMVSPSSHGQHCSISEVSEKIGMSSQTSSCRVYDRFPSSLNPATGSQLSPILISGNNNIVNFEMADRIFQGSDFVNARDHLSCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152117g00002 501 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Stsc152117g00002 501 MobiDBLite consensus disorder prediction 77 98 - -
Stsc152117g00002 501 Coils Coil 469 489 - -
Stsc152117g00002 501 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 487 IPR044817 GO:0003677
Stsc152117g00002 501 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Stsc152117g00002 501 MobiDBLite consensus disorder prediction 76 98 - -
Stsc152117g00002 501 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Stsc152117g00002 501 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Stsc152117g00002 501 Pfam SBP domain 153 226 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152117g00002 Stsc-Chr152117 12959 15860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152117g00002 103 227 SBP-box Gene Family AT1G69170 64.800 7.30e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc152117g00002 SBP 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152117g00002 - - adu:107468861 839.721