Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152115g00001 ATGACGGAACTCGACCATTCTCTCTCCGACAAGAAAAAGAAGAAGAACAAGAAGCACACCGATGACAACACCACCACCACCAACACAGACACCACCGTTGCCGCCGCCTCCGACTTCATGATCAAGCCACAGAGCTTCACCCCAACCTTAGACACATCACAATGGCCAATCCTCCTCAAGAACTACGACCGCCTCAACGTCCGTACCGGTCACTACACTCCAATCCCCTCCGGCTACTCTCCGTTGAAGCGCCCCCTCGCCGATTACCTCAAATACGGCGTCCTCAACCTCGATAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTGGCTTGGATCAAGCGAATCCTCCGTGTCGAAAAGACCGGCCACAGCGGAACCCTAGACCCTAAGGTCACCGGAAACTTGATCGTCTGCATCGACCGTGCGACGCGGTTGGTGAAATCCCAGCAAGGCGCAGGTAAGGAGTATGTCTGCGTCGCCCGGCTCCACTCCGCCGTTCCCGACACGGCTCGAGTCGCCCGGGCGCTGGAGACTTTGACGGGCGCTGTTTTCCAGCGCCCGCCGCTTATCTCCGCCGTTAAGCGGCAGCTTAGGATTAGAACTATTTATGAGAGTAAGTTGCTTGAGTATGATGCTGATAGGCATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGGACTTATGTTAGGACAATGTGTGTTCATTTGGGTTTGATTCTTGGTGTTGGTGGGCATATGCAAGAACTTAGGAGGGTTAGGTCTGGGATCATGGGGGAGAAGGATAACATGGTTACTATGCATGATGTCATGGATGCTCAGTGGGTCTATGATAATTATAGAGATGAGAGTTATTTGAGGAGGGTTGTTATGCCGCTCGAGGTGCTGCTGACTAGCTATAAGAGGCTTGTTGTTAAGGATTCGGCTGTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGAAGGGGGAGGCTATTGCGTTGGGGATTGCGGAGATGACAACTGCCGTGATGGCGACTTGTGA 1125 0.4702 MTELDHSLSDKKKKKNKKHTDDNTTTTNTDTTVAAASDFMIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLADYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDTARVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGGGYCVGDCGDDNCRDGDL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152115g00001 374 SUPERFAMILY Pseudouridine synthase 52 297 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc152115g00001 374 Coils Coil 374 374 - -
Stsc152115g00001 374 Pfam TruB family pseudouridylate synthase (N terminal domain) 113 229 IPR002501 GO:0006396
Stsc152115g00001 374 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 59 311 IPR004802 GO:0006396
Stsc152115g00001 374 Pfam DKCLD (NUC011) domain 52 109 IPR012960 -
Stsc152115g00001 374 Gene3D Pseudouridine synthase 86 291 - -
Stsc152115g00001 374 MobiDBLite consensus disorder prediction 1 29 - -
Stsc152115g00001 374 CDD PseudoU_synth_hDyskerin 91 273 - -
Stsc152115g00001 374 SMART DKCLD_2 51 109 IPR012960 -
Stsc152115g00001 374 MobiDBLite consensus disorder prediction 1 24 - -
Stsc152115g00001 374 Coils Coil 354 355 - -
Stsc152115g00001 374 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 12 311 IPR004802 GO:0006396
Stsc152115g00001 374 Coils Coil 309 310 - -
Stsc152115g00001 374 FunFam H/ACA ribonucleoprotein complex subunit CBF5 85 291 - -
Stsc152115g00001 374 Pfam tRNA pseudouridylate synthase B C-terminal domain 230 296 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152115g00001 Stsc-Chr152115 2867 5046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152115g00001 1 310 NAC Transcription Factor Family AT3G57150 83.871 1.09e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152115g00001 K11131 - han:110916232 526.939