Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152107g00004 ATGGAGCGGTACGGCCGGTCCAGCGAGGGTTCCCGGTCTGATCCGTCGCCGGAGTGGACGGGAACCGGCCTTGAAGAGCCGGTGTGGCAAATGGGATTGGGTGCTGCAGAGGAATCTTACCCCCAAAGGCCTGATGAGGCTGATTGTATCTACTATTTGAGGACTGGATTCTGTGGTTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCGTTCCGCGGCTATTGGTGCTGCTGCTAGGACTGGCGGAGGGGAGTATCCGGAGCGAACTGGCCAGCCTTTGTGTCAGACAGGGTCATGCAAATTTGGTTCTTCCTGCAAGTACAACCATCCTAGGCAGGCTGGAGGCTCTGCTACCCCTGTGTCACTAAATTATTATGGTTATCCTTTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACTGGGAGATGCAAGTTTGGTGGAACCTGTAAATTCCATCATCCCCAGCCTGCTGACATCCAAGTTCCGGTGTCATCACTGGTTCCCCCAGTTTCACCTTTACCTGTACCAGTACCTTCACCGTTATATCAATCTGTACAGCCTCCATCTGGTCCTTCATCTCAACAAATTGGTGTACTGGTTGCTAGACCACCTCTTCTACCTGGTTCACTAGTCCAAAGCCCTTATGGTCCTGTGGTTCTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCATATCAGGCTCCGGCAGCAAGCCCTGTCCTTCCTTCCAGTACTCCATCCAATGTTGGGTCAGCACAGCTTTATGGAATAACTCAGGTGCCATCATCACCAGCTGCCTATGCTGGACCTTATCAACCTTCCGGTTCTTCCCTTGGCCTTTCAGGCAGTAGTCAGAAAGAGCAACCATTGCCAGAAAGGCCAGATCAACCAGAATGTCAGCATTACTTAAAGACAGGGGAGTGTAAATTCGGTCCATCATGTAGGTATCACCATCCACCAGACATGAGTGTGCCCAAAGGGAATGTAATTCTTAGTCCTGCTGGCCTTCCGTTACGTCCGGGGGCACCACCTTGCACACATTATGCACAGCGTGGAGTATGCAAGTTTGGCTCTGCATGCAGATTCGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCTTCATCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTTGGTTCTTCAGTTGGTACACTTGCTCTGTCATCTTCGACATCAGAGTTGCGGCCTGAACTCACCTCAGGATCCAGCAAGGAGTCTGGTTCATCTCGGATACCATCTTCAATGAGCACATTGACCGGATCAGTCGGCTTGACTTTGTCGACCGGTGAACCTATTTCTCAATCAAGTACTCAATCATCTGCTCAGAGTTCCAGTACATCAGCGGCTGCTGATACTGCCACAACTAGTACTGTCTCCCGCAACTCCTCAAGCATGAGTTAA 1446 0.5124 MERYGRSSEGSRSDPSPEWTGTGLEEPVWQMGLGAAEESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRSAAIGAAARTGGGEYPERTGQPLCQTGSCKFGSSCKYNHPRQAGGSATPVSLNYYGYPLRPGEKECSYYVKTGRCKFGGTCKFHHPQPADIQVPVSSLVPPVSPLPVPVPSPLYQSVQPPSGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPFSGWGPYQAPAASPVLPSSTPSNVGSAQLYGITQVPSSPAAYAGPYQPSGSSLGLSGSSQKEQPLPERPDQPECQHYLKTGECKFGPSCRYHHPPDMSVPKGNVILSPAGLPLRPGAPPCTHYAQRGVCKFGSACRFDHPMGSLSYSPSASSLADMPVAPYPVGSSVGTLALSSSTSELRPELTSGSSKESGSSRIPSSMSTLTGSVGLTLSTGEPISQSSTQSSAQSSSTSAAADTATTSTVSRNSSSMS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152107g00004 481 MobiDBLite consensus disorder prediction 271 300 - -
Stsc152107g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Stsc152107g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Stsc152107g00004 481 SUPERFAMILY CCCH zinc finger 348 374 IPR036855 GO:0046872
Stsc152107g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Stsc152107g00004 481 PANTHER PROTEIN PHOSPHATASE RELATED 34 403 - -
Stsc152107g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Stsc152107g00004 481 MobiDBLite consensus disorder prediction 402 481 - -
Stsc152107g00004 481 SUPERFAMILY CCCH zinc finger 45 71 IPR036855 GO:0046872
Stsc152107g00004 481 SUPERFAMILY CCCH zinc finger 302 326 IPR036855 GO:0046872
Stsc152107g00004 481 ProSiteProfiles Zinc finger C3H1-type profile. 97 114 IPR000571 GO:0046872
Stsc152107g00004 481 MobiDBLite consensus disorder prediction 1 36 - -
Stsc152107g00004 481 Gene3D - 35 95 - -
Stsc152107g00004 481 Gene3D - 96 168 - -
Stsc152107g00004 481 Gene3D - 296 382 - -
Stsc152107g00004 481 MobiDBLite consensus disorder prediction 279 295 - -
Stsc152107g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 159 IPR000571 GO:0046872
Stsc152107g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 371 IPR000571 GO:0046872
Stsc152107g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Stsc152107g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Stsc152107g00004 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 113 IPR000571 GO:0046872
Stsc152107g00004 481 SUPERFAMILY CCCH zinc finger 134 160 IPR036855 GO:0046872
Stsc152107g00004 481 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Stsc152107g00004 481 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Stsc152107g00004 481 SMART c3hfinal6 90 113 IPR000571 GO:0046872
Stsc152107g00004 481 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Stsc152107g00004 481 SMART c3hfinal6 43 70 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152107g00004 Stsc-Chr152107 11198 17280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152107g00004 1 437 C2H2 Transcription Factor Family AT5G18550 55.844 2.76e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc152107g00004 zf-CCCH 5.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152107g00004 - - gmx:100789405 674.855