Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152107g00003 ATGTCCACCTCCTCTGGAACCTCACACACTTACCTGAAAGCACATGAAAAACACATGAATAATTCTTCTTCTTCATCATCACCTCTTATTATTATACAACGCAACACTTCACCTTCTTGTGGCGCTGAGAGAAGAGGCAGAAGAAAACAGCAATCATCAGAACCAGGAAGGTTTCTTGGTGTGAGAAGACGGCCATGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACACTGGCTTGGAACATTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTGGCTTAGCAAGAACAAACTTCATCTACACAAGCACACAAAACAACACCATCAATCATGGTAATAATCTTCTCATCAACTACATGGATAATAATCCTCATCATCATCATCAACAAGTTCTGTTGCCAGCACCTCCACAAGATTATTTCCTCAACAACATGCATCAGAATTACGTCATGTCTCAGCAGCTTGATAATAATATTACTTCCCATGCTGATGATGAGAACTCTTCAAAGTTGATGATGAACAATGATGAGAATTTGTTCTTCTTCTCAGCCACTGATTCCACTAACTCTGGCTATCTGGAATGCATTGTCCCTGATAACTGTTTCAGACCTATTTCTTCTTCTACTACTACTGCCACCAACAACAATAATACTTCAAACTCCTTCTCCTCCATGACAAAGAGCAATCATAATAAAGTGATGAGTTCTGCTTCAGCTTCTAGTGACCAAAATGTTGTTAGCAGCAATAACACAAACATCATGGAGGCATTGAAGAACATGCGAACAATGGCACCACATTACTATGGGGGTGGAGAACCTGTTGGTGACGAAGTAGGATTATTCTGGAACAATCATGATCAATCATCATGGGACTGCAATAATTATGGTGAACTTTCAGCTATATTTGACAACCAAGAATTCGAAGGTTGCATGAATGCATTGTGTCCCATCGTCAATGAGACTACTCCAAGCTATGGAGTAGTAATGACTACTCGTGAGGCTGCTATTCCTTCAACTACTTCTTCTTCTTCTCCATCACTTCATTCCTTCTTTGGGGGATGTTGA 1107 0.4083 MSTSSGTSHTYLKAHEKHMNNSSSSSSPLIIIQRNTSPSCGAERRGRRKQQSSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSIKGGLARTNFIYTSTQNNTINHGNNLLINYMDNNPHHHHQQVLLPAPPQDYFLNNMHQNYVMSQQLDNNITSHADDENSSKLMMNNDENLFFFSATDSTNSGYLECIVPDNCFRPISSSTTTATNNNNTSNSFSSMTKSNHNKVMSSASASSDQNVVSSNNTNIMEALKNMRTMAPHYYGGGEPVGDEVGLFWNNHDQSSWDCNNYGELSAIFDNQEFEGCMNALCPIVNETTPSYGVVMTTREAAIPSTTSSSSPSLHSFFGGC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152107g00003 368 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Stsc152107g00003 368 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 264 - -
Stsc152107g00003 368 SUPERFAMILY DNA-binding domain 58 114 IPR016177 GO:0003677
Stsc152107g00003 368 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Stsc152107g00003 368 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Stsc152107g00003 368 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Stsc152107g00003 368 MobiDBLite consensus disorder prediction 35 59 - -
Stsc152107g00003 368 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Stsc152107g00003 368 Pfam AP2 domain 60 106 IPR001471 GO:0003700|GO:0006355
Stsc152107g00003 368 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Stsc152107g00003 368 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152107g00003 Stsc-Chr152107 8547 9653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152107g00003 29 242 AP2-EREBP Transcription Factor Family AT5G18560 45.098 3.25e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc152107g00003 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152107g00003 - - adu:107468049 503.827