Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152105g00005 ATGGATTCTAATAATTTTGAAAATATAGGGCTTCCAATCCTCTCTTCTTCTCTTGAAGAAGAGGAAAATGCAAGCCTCTCCGCCATGCTTCTAAGCTTCAGCCCAATGGTCTACACTGCAGTACTTAATGCTTCACTTCAACTCAATTTATTTGATATCATATCTAACATTACTAAGGCCGCGAAAACACCTTTTAGAGGTGTTTCTGCCTCCGATGTTGCTTCAAAGCTTGATACAGCAACGAAGACACAGCATCCGAAATTGTGTCGTAGGCTTGATCGGATGCTGCGTCTTCTTGCAAGCTACTCTCTTCTCAATTGCACCACGCGCGTCAGCGAAGATGGTAGCGTTGAGAGAGTTTTTGAAGTGTCTCTTGTTGGTAAATACTTTGTTGTTAATGGTGATGAGAATGAGAATGGCTCTGTGGCTTCTTTCTCAGCATTTATGGGTCACCGAAAAGTTGTTGATGCTTTGTGA 477 0.4214 MDSNNFENIGLPILSSSLEEEENASLSAMLLSFSPMVYTAVLNASLQLNLFDIISNITKAAKTPFRGVSASDVASKLDTATKTQHPKLCRRLDRMLRLLASYSLLNCTTRVSEDGSVERVFEVSLVGKYFVVNGDENENGSVASFSAFMGHRKVVDAL 158
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc152105g00005 158 Pfam Dimerisation domain 41 100 IPR012967 GO:0046983
Stsc152105g00005 158 Gene3D - 13 130 IPR036388 -
Stsc152105g00005 158 SUPERFAMILY "Winged helix" DNA-binding domain 20 134 IPR036390 -
Stsc152105g00005 158 FunFam Caffeic acid 3-O-methyltransferase 11 130 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc152105g00005 Stsc-Chr152105 11740 12216 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152105g00005 20 156 Monolignol Biosynthesis Gene Families AT1G33030 36.496 3.75e-12 60.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152105g00005 - - mtr:11418328 140.969