Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152105g00004 ATGATTATCAACAAGTATCCTTCAATTAAGGGTATCAATTTTGATCTACCCCAAGTGATTCTAAATGCTCCAACTTATCCAGGTATAGAGCAAATTGCAGGAGACATGTTTGAGAGTGTTCCAAAAGGTGATGCCATACTATTGAAGGGTGTATTGCACAATTGGAGTGAGGAAGATTGCTTGAAAATCCTAAGTAATTGTTACAAATCTTTGCCACAAAATGGAAAAGTGATAGTTGTGGACTTCATAATGCCTGAAGTAATCCAATCAACAGAAGCTGATAAAATAATTACAAGCTTTGACAATCTCATGTTCCTTGATAGTGGCAGGGAAAGAACCATGAAAGAATTCGAGGGTTTATGCATAAGATCAGGGTTTTCTAATTTTCAAGTTGCATGTCAAGCTTTCTCTGCTTTAGGAGTAATGGAATTTTATAAGACTCATTGA 447 0.3579 MIINKYPSIKGINFDLPQVILNAPTYPGIEQIAGDMFESVPKGDAILLKGVLHNWSEEDCLKILSNCYKSLPQNGKVIVVDFIMPEVIQSTEADKIITSFDNLMFLDSGRERTMKEFEGLCIRSGFSNFQVACQAFSALGVMEFYKTH 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152105g00004 148 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 144 IPR029063 -
Stsc152105g00004 148 Pfam O-methyltransferase domain 2 127 IPR001077 GO:0008171
Stsc152105g00004 148 Gene3D Vaccinia Virus protein VP39 1 135 IPR029063 -
Stsc152105g00004 148 PANTHER O-METHYLTRANSFERASE 2 144 IPR016461 GO:0008168
Stsc152105g00004 148 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 146 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152105g00004 Stsc-Chr152105 9812 10782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152105g00004 1 136 Monolignol Biosynthesis Gene Families AT5G54160 53.623 2.88e-50 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152105g00004 - - gmx:100784030 244.973