Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152101g00003 ATGGACAATCCCTTCCACCCCCCTCTTCCTCCGCAATACCCCACCCTCACCGCAGCCGATTTCGGACTCTCCGATGACGACGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACGACGACGAAGAAGAGGATGAAGATTCATCGCCTAGGGCTTTGCCAGTGGCTCCTTCCACAACTTCTACTCCACATCCAATTGTTATCACCGTGGAATCGCAGTCGCAGAACAGCTTCGGAGACGACGACGGAAGCAACAAGCGCCGCAGAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGACGGCAGTCAAGGCAGCGAGTGGAACCGCACCGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAATAGCGGCGACCACCATATCTGTTGTCTTCCTTGTGGACATATATATGGTATGTCTTGTATCAAAAGATGGCTTCAACAGAGACGAAGTTCGGGGAAGTGTCCACAATGCAATATGAAATGCTCAGTAAAGGATCTGAGGAAACTGTATGCATCTCGAGTAGTTACTGTCGATGATGAATCTCAGAAGACAATTCGGTCACTTGAAGCCAAATGTGCTGCACTGGAAAGTAAGGGTGCTGATTGGCTTAAGAAAGAGGCTGTATGGCGGAAAAGAGAAGCTGCATATCATCTGGAAGTTCAGAAGCTTAGAGAGAGAAATGCTAACTTGGAGCAGCTGCTGCTGGATATGCAGAGCAAGCAATATGGATTCATACACGGCACTCAGAATTGTCAGTGGATATCTGGAAAGGAGCACAACTTTGGCTTAAAGTCCCATGCAAAAGGATCTTTTTGCAATTTTGAGTTACAGAAAGCATTTGATATTAATGATGCACGAGTCTTCGATATGGATGTATCCAATCAAATTTTACTAATTTCACGAAAGCCAAGGGTGATAGATGGACCAGACATTCTAACTAAAATGAGCTTGATACCTCCATTTGATATGGAAGATATTTTATTGCCTTCTACTACAAAGGGTATCAGAGACCTACATATTTCTCCTTATGATAAAAGCCTAGCTCTCTGTGCTTCAATAGGGAAGAAGTTATCAGTGCTCAGCGTGCAGAGCAAAAATACCGTTATCAACTATGATCTACAGGTTCCTCCTTGGTCATGTTCATGGGATCTCAACAGTTCGCATTACATGTATGCTGGACTTCAGAATGGTTCTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAATCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAATCTCCAAGTTTTCCTAACACCATCTTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGACACCGATAACCAAGGAATTTGTATATCCCTGGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGTCCAAAATTTGACATGTCAATGGGTACCCAGCTTTCTCAACTATCATCCACTCCTTCTCAAGTAATTGGATCAGGAGTGCAGGGCTGTCATGTCTTATTCAAGAGACAGGGCACTGATCATTTTGAAAAGATGGGTTCCTCGTATGCCAATATAAGTAAAATTAGATTTCCAAAACACGCTATTGTAGACATGGGGGGTCAAAGCAGATTGTTTGCTGCTGTAGATGAAGCAACATTTGAATTGATCTTGCACGAGCTGCCTTCTTTTAGCGTTATCGAACGATTCAAACTGCCTTCTCCGGCTCGTGATACTAGGTACTTTCCGAGCCATGGAATTCTTGGTTGTTTGAGTGAGACAACATTGCAACTTTTCGAAGTCTCGTGTGCAAGGTAA 1896 0.4467 MDNPFHPPLPPQYPTLTAADFGLSDDDEEEEEEEEEEEEEEEEEEDDDEEEDEDSSPRALPVAPSTTSTPHPIVITVESQSQNSFGDDDGSNKRRRTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHHICCLPCGHIYGMSCIKRWLQQRRSSGKCPQCNMKCSVKDLRKLYASRVVTVDDESQKTIRSLEAKCAALESKGADWLKKEAVWRKREAAYHLEVQKLRERNANLEQLLLDMQSKQYGFIHGTQNCQWISGKEHNFGLKSHAKGSFCNFELQKAFDINDARVFDMDVSNQILLISRKPRVIDGPDILTKMSLIPPFDMEDILLPSTTKGIRDLHISPYDKSLALCASIGKKLSVLSVQSKNTVINYDLQVPPWSCSWDLNSSHYMYAGLQNGSVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQSPSFPNTILSASAIGLCQWNIDSEEGPFMLPDTDNQGICISLAYCPSSDDIVVSYRPKFDMSMGTQLSQLSSTPSQVIGSGVQGCHVLFKRQGTDHFEKMGSSYANISKIRFPKHAIVDMGGQSRLFAAVDEATFELILHELPSFSVIERFKLPSPARDTRYFPSHGILGCLSETTLQLFEVSCAR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152101g00003 631 SUPERFAMILY RING/U-box 118 179 - -
Stsc152101g00003 631 Coils Coil 23 54 - -
Stsc152101g00003 631 SMART ring_2 127 172 IPR001841 -
Stsc152101g00003 631 Pfam Ring finger domain 127 173 IPR001841 -
Stsc152101g00003 631 ProSiteProfiles Zinc finger RING-type profile. 127 173 IPR001841 -
Stsc152101g00003 631 MobiDBLite consensus disorder prediction 1 115 - -
Stsc152101g00003 631 SUPERFAMILY WD40 repeat-like 290 499 IPR036322 GO:0005515
Stsc152101g00003 631 MobiDBLite consensus disorder prediction 60 87 - -
Stsc152101g00003 631 MobiDBLite consensus disorder prediction 22 55 - -
Stsc152101g00003 631 CDD mRING-C3HGC3_RFWD3 123 185 - -
Stsc152101g00003 631 PANTHER RFWD3 PROTEIN 25 629 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Stsc152101g00003 631 Coils Coil 228 255 - -
Stsc152101g00003 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 240 IPR013083 -
Stsc152101g00003 631 Gene3D - 298 508 IPR015943 GO:0005515
Stsc152101g00003 631 Coils Coil 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152101g00003 Stsc-Chr152101 11100 15892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152101g00003 71 185 C3H Transcription Factor Family AT5G48655 28.571 1.32e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152101g00003 K15691 - gmx:100818898 688.337