Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152097g00004 ATGGGGTTTTGGGATAGGCTTTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGATTGGAATATCGGGTGCTTCATGCAATCACCAATAGCCGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGGAATGGCAGCTATGCTCTTACACAAGATTCCTACCAGAATGCAGTGAATACCCTGTCAGACATGCCCTTGTCCTCATTTTCGTTCCAGGGTCGTGGACCACGAAACCGCCTTCAGTGTGTTATTTCTCTATACCAGTCATTGGCTGAAGCTGAACTTCAAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATCTCGCAAACCCATGACCAAAAAAGTATTTAAACAGGATGAAGGCTCCAACAGATGTAATTTGTTGTGTGCTTGGACAAGAAATGATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCATCCTGTAGGGAGATCAAATGGATCGCAAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCACTTGGAAGGGAAATTAGCTGCCAATGGAATGGTAGTGGCTACACGATGCAATCCTGTTACCAGTGCTATAGAATTCAGGCTAGAACCGTTCCGGAATGGTTTTACGAGAAATTCAAGCCATCCATCAGAAGAGCAAGTAATATCTGATCTGGCATATTTATTTGATTCAATAATTCACCCCGATAAAATGGTGAGCTATAGACCAAAGGTTATGAGGAAAAGAGTGGCTGATTCGGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAGGAGTACAAGCCAGTGGAAGTGGCCATTGAACAGCCCCCGGTCATTAGACTGTGGTGTCAAGTTGAGCTTTCTGATCAGCCAAAAGATGATCCATCTCCACCTCCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGCGCCTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCCGAGGAAGTGATAGGGTATGGGTCTATCAGTGACTCGCTCACCTTAAAATTCCTGCTTGGAACAAGTGCGATGGTGAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGTATGGAGCGGGGTACAGAGACATGGAAAGTTGACTGCATTTGTGGGGCTAAGGATGACGATGGAGAAAGAATGTTAGCATGTGATACTTGTAGTGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCAATACCTTCTAAGTTCGTGTGTCTTAGATGCCTTAGCTCATACCGCCGGGGAGCTGTGAAGTTGCCAGACTCTGCTGTTGAAGCTAACAAGACTTGTAAATTGCCGAATGCTTCTTGCAGAGATGAAGCGGCCACAGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGGGTACGTTAG 1512 0.4458 MGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDSYQNAVNTLSDMPLSSFSFQGRGPRNRLQCVISLYQSLAEAELQTIKDLFSFLLTLVHESRKPMTKKVFKQDEGSNRCNLLCAWTRNDVEDVQQALIKVLLASASCREIKWIARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVATRCNPVTSAIEFRLEPFRNGFTRNSSHPSEEQVISDLAYLFDSIIHPDKMVSYRPKVMRKRVADSARKLLDCKQFVKEYKPVEVAIEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWKVDCICGAKDDDGERMLACDTCSVWQHTRCAGIDNSDAIPSKFVCLRCLSSYRRGAVKLPDSAVEANKTCKLPNASCRDEAATDCAAVACNITVDFGVR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152097g00004 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 458 IPR013083 -
Stsc152097g00004 503 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 457 - -
Stsc152097g00004 503 SUPERFAMILY FYVE/PHD zinc finger 402 457 IPR011011 -
Stsc152097g00004 503 ProSitePatterns Zinc finger PHD-type signature. 408 452 IPR019786 -
Stsc152097g00004 503 SMART PHD_3 407 453 IPR001965 -
Stsc152097g00004 503 Pfam PHD-finger 408 454 IPR019787 -
Stsc152097g00004 503 CDD PHD_MMD1_like 407 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152097g00004 Stsc-Chr152097 4359 6539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152097g00004 1 452 PHD Transcription Factor Family AT5G22260 27.551 2.89e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc152097g00004 PHD 4.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152097g00004 K26271 - gmx:100780558 774.622