Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152097g00003 ATGGATTTGTCCAAGAAATTTGGATTGGAATATCGGGTGCTTCATGCAATCACCAATAGCCGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGGAATGGCAGCTATGCTCTTACACAAGATTCCTACCAGAATGCAGTGAATACCCTGTCAGACATGCCCTTGTCCTCATTTTCGTTCCAGGGTCGTGGACCACGAAACCGCCTTCAGTGTGTTATTTCTCTATACCAGTCATTGGCTGAAGCTGAACTTCAAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATCTCGCAAACCCATGACCAAAAAAGTATTTAAACAGGATGAAGGCTCCAACAGATGTAATTTGTTGTGTGCTTGGACAAGAAATGATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCATCCTGTAGGGAGATCAAATGGATCGCAAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCACTTGGAAGGGAAATTAGCTGCCAATGGAATGGTAGTGGCTACACGATGCAATCCTGTTACCAGTGCTATAGAATTCAGGCTAGAACCGTTCCGGAATGGTTTTACGAGAAATTCAAGCCATCCATCAGAAGAGCAAGTAATATCTGATCTGGCATATTTATTTGATTCAATAATTCACCCCGATAAAATGGTGAGCTATAGACCAAAGGTTATGAGGAAAAGAGTGGCTGATTCGGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAGGAGTACAAGCCAGTGGAAGTGGCCATTGAACAGCCCCCGGTCATTAGACTGTGGTGTCAAGTTGAGCTTTCTGATCAGCCAAAAGATGATCCATCTCCACCTCCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGCGCCTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCCGAGGAAGTGATAGGGTATGGGTCTATCAGTGACTCGCTCACCTTAAAATTCCTGCTTGGAACAAGTGCGATGGTGAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGTATGGAGCGGGGTACAGAGACATGGAAAGTTGACTGCATTTGTGGGGCTAAGGATGACGATGGAGAAAGAATGTTAGCATGTGATACTTGTAGTGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCAATACCTTCTAAGTTCGTGTGTCTTAGATGCCTTAGCTCATACCGCCGGGGAGCTGTGAAGTTGCCAGACTCTGCTGTTGAAGCTAACAAGACTTGTAAATTGCCGAATGCTTCTTGCAGAGATGAAGCGGCCACAGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGGGTACGTTAG 1458 0.4465 MDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDSYQNAVNTLSDMPLSSFSFQGRGPRNRLQCVISLYQSLAEAELQTIKDLFSFLLTLVHESRKPMTKKVFKQDEGSNRCNLLCAWTRNDVEDVQQALIKVLLASASCREIKWIARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVATRCNPVTSAIEFRLEPFRNGFTRNSSHPSEEQVISDLAYLFDSIIHPDKMVSYRPKVMRKRVADSARKLLDCKQFVKEYKPVEVAIEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWKVDCICGAKDDDGERMLACDTCSVWQHTRCAGIDNSDAIPSKFVCLRCLSSYRRGAVKLPDSAVEANKTCKLPNASCRDEAATDCAAVACNITVDFGVR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152097g00003 485 ProSitePatterns Zinc finger PHD-type signature. 390 434 IPR019786 -
Stsc152097g00003 485 SMART PHD_3 389 435 IPR001965 -
Stsc152097g00003 485 CDD PHD_MMD1_like 389 434 - -
Stsc152097g00003 485 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 439 - -
Stsc152097g00003 485 SUPERFAMILY FYVE/PHD zinc finger 384 439 IPR011011 -
Stsc152097g00003 485 Pfam PHD-finger 390 436 IPR019787 -
Stsc152097g00003 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 440 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152097g00003 Stsc-Chr152097 4359 6640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152097g00003 2 434 PHD Transcription Factor Family AT5G22260 26.964 1.22e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc152097g00003 PHD 4.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152097g00003 K26271 - gmx:100780558 741.88