Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152097g00002 ATGGTGGTCAACGAGAGACCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCTATGACTTTCTCACTTTCCCTTCCGCCGGCGGGGATTCCACCGACTCACCCTTCCGCAACTGTGTGCAGCGGTTCCTGGCAGAACACGGTCGCATAACGTTTCCGCCTTCACTGTTCCCGGCGCTGATGACATGGCAGATCTTGTTCCGGGTTGGTGACCTTGTAGAAGGCCCCGATCTCTCGCCTGCCGTGGTCACGCTTGACATTGTCGAGGAAGATGTCACGCGCTCCCGAAGTTCAGTGTACTGCGACCAGTGTCGCGTCGTTGGGTGGAGCGGTCATCCCGTCTGTCGAAAGCGATACCATTTCATTATCAGAGCTGCCAGTAACTCCGTAGAGTCTTACCAAAGACCTTGTTCGAGATGTGCAAGTCTTGTCCAACTATCTGAACCAAGGTGTAAATCGTGTGACTTCTCCATTACTGTGGATGATCTTGAGGATTGGGTGTATAATCAAATCGAAGATAACACCCATCTTCTTCATGGTGTTGTACACTCCAATGGTTACGGTCACCTGCTTACTCTCAATGGAAGAGGTGGTGGCTCAAAGCTGCTCTCTGGATATGATATTATGGGGTTTTGGGATAGGCTTTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGATTGGAATATCGGGTGCTTCATGCAATCACCAATAGCCGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGGAATGGCAGCTATGCTCTTACACAAGATTCCTACCAGAATGCAGTGAATACCCTGTCAGACATGCCCTTGTCCTCATTTTCGTTCCAGGGTCGTGGACCACGAAACCGCCTTCAGTGTGTTATTTCTCTATACCAGTCATTGGCTGAAGCTGAACTTCAAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATCTCGCAAACCCATGACCAAAAAAGTATTTAAACAGGATGAAGGCTCCAACAGATGTAATTTGTTGTGTGCTTGGACAAGAAATGATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCATCCTGTAGGGAGATCAAATGGATCGCAAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCACTTGGAAGGGAAATTAGCTGCCAATGGAATGGTAGTGGCTACACGATGCAATCCTGTTACCAGTGCTATAGAATTCAGGCTAGAACCGTTCCGGAATGGTTTTACGAGAAATTCAAGCCATCCATCAGAAGAGCAAGTAATATCTGATCTGGCATATTTATTTGATTCAATAATTCACCCCGATAAAATGGTGAGCTATAGACCAAAGGTTATGAGGAAAAGAGTGGCTGATTCGGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAGGAGTACAAGCCAGTGGAAGTGGCCATTGAACAGCCCCCGGTCATTAGACTGTGGTGTCAAGTTGAGCTTTCTGATCAGCCAAAAGATGATCCATCTCCACCTCCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGCGCCTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCCGAGGAAGTGATAGGGTATGGGTCTATCAGTGACTCGCTCACCTTAAAATTCCTGCTTGGAACAAGTGCGATGGTGAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGTATGGAGCGGGGTACAGAGACATGGAAAGTTGACTGCATTTGTGGGGCTAAGGATGACGATGGAGAAAGAATGTTAGCATGTGATACTTGTAGTGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCAATACCTTCTAAGTTCGTGTGTCTTAGATGCCTTAGCTCATACCGCCGGGGAGCTGTGAAGTTGCCAGACTCTGCTGTTGAAGCTAACAAGACTTGTAAATTGCCGAATGCTTCTTGCAGAGATGAAGCGGCCACAGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGGGTACGTTAG 2139 0.4652 MVVNERPTKRMKRRVTADLYDFLTFPSAGGDSTDSPFRNCVQRFLAEHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNSVESYQRPCSRCASLVQLSEPRCKSCDFSITVDDLEDWVYNQIEDNTHLLHGVVHSNGYGHLLTLNGRGGGSKLLSGYDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDSYQNAVNTLSDMPLSSFSFQGRGPRNRLQCVISLYQSLAEAELQTIKDLFSFLLTLVHESRKPMTKKVFKQDEGSNRCNLLCAWTRNDVEDVQQALIKVLLASASCREIKWIARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVATRCNPVTSAIEFRLEPFRNGFTRNSSHPSEEQVISDLAYLFDSIIHPDKMVSYRPKVMRKRVADSARKLLDCKQFVKEYKPVEVAIEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWKVDCICGAKDDDGERMLACDTCSVWQHTRCAGIDNSDAIPSKFVCLRCLSSYRRGAVKLPDSAVEANKTCKLPNASCRDEAATDCAAVACNITVDFGVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152097g00002 712 SMART PHD_3 616 662 IPR001965 -
Stsc152097g00002 712 SUPERFAMILY FYVE/PHD zinc finger 611 665 IPR011011 -
Stsc152097g00002 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 666 - -
Stsc152097g00002 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 667 IPR013083 -
Stsc152097g00002 712 CDD PHD_MMD1_like 616 661 - -
Stsc152097g00002 712 Pfam PHD-finger 617 663 IPR019787 -
Stsc152097g00002 712 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152097g00002 Stsc-Chr152097 4359 7442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152097g00002 7 661 PHD Transcription Factor Family AT5G22260 27.626 2.25e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc152097g00002 PHD 7.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152097g00002 K26271 - gmx:100780558 1147.88