Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152095g00001 ATGTCTTCATCTTTTCCTGTTCTTCCTACATCCGCATCGCAGGCTTCATCTATAAATTCCAACATCAGAAGTGTTGGTCACATGTTCTCAACCCCTGCTGATTTCCCTGATGATGGCATGTCTTTTCCCACAGCTTCGGAAATCCATTTGACAGCGCAAGATTCTCACCCGCTGCAACAAATTGATGATGTTTCCTGGGGAGCAGATCTCTTTGACAATATTCTTCAGTTTCCGGATAATAACAATGTTCCTTTCCAGAATGATCATACAGTGCATAGTGCTCCTGCATACACATCCAATGATATTCCAAAGGCGGTCGATTTTGAATGGGTTGATCGCCTCATTTCAGAGGATGATCCTCTTCAGGCGAATTGGAACCAGTTTGTTGGTGATAATAATGTAGCAGAGCCTAAATCAAAGGAAAGTCAGGTATCAATACAGCAGCAAGTACCATCCGTTCAAGCTAATGGTATTCCGGACACGGTCCCATCCGCGCCACAAACTAAGCAAAGAATGCGTTGGACTCCAGAGCTTCATGAGGCCTTTGTGGAGGCAGTGAATCAGCTTGGTGGTAGTGAGAGGGCTACTCCAAAGGGGGTCTTGAACCTAATGAAAGTTGAAAGCCTTACCATATATCATGTGAAAAGCCACCTTCAGAAATATAGAACTGCCAGATACAAACCTGAGCCATCAGAAGGAGCTCCTGAGAAAAAGTCGACGGATTCAATTGAAGAAATGAAGCCTCTAGACTTAAAAACGAGTAAGGGGATAACTGAAGCATTGCGGTTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATACAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATAGAGGGCTCGTCCTCTGCTCTGCTATCAAACGCGGGGCAACATACAAATGAAAATTCAGAACTTGGGAGTGACGACGATAATAAACGTGAACCAGGAAACGAGCCGCCAGTTGCGCCTCCCTCGAAACGGGTTAAAAGTTGA 1041 0.4448 MSSSFPVLPTSASQASSINSNIRSVGHMFSTPADFPDDGMSFPTASEIHLTAQDSHPLQQIDDVSWGADLFDNILQFPDNNNVPFQNDHTVHSAPAYTSNDIPKAVDFEWVDRLISEDDPLQANWNQFVGDNNVAEPKSKESQVSIQQQVPSVQANGIPDTVPSAPQTKQRMRWTPELHEAFVEAVNQLGGSERATPKGVLNLMKVESLTIYHVKSHLQKYRTARYKPEPSEGAPEKKSTDSIEEMKPLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQIEGSSSALLSNAGQHTNENSELGSDDDNKREPGNEPPVAPPSKRVKS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152095g00001 346 Coils Coil 258 278 - -
Stsc152095g00001 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 223 IPR006447 GO:0003677
Stsc152095g00001 346 MobiDBLite consensus disorder prediction 303 318 - -
Stsc152095g00001 346 Pfam Myb-like DNA-binding domain 171 222 IPR001005 -
Stsc152095g00001 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 152 323 IPR044848 GO:0003700
Stsc152095g00001 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 226 IPR017930 -
Stsc152095g00001 346 MobiDBLite consensus disorder prediction 303 346 - -
Stsc152095g00001 346 Gene3D - 168 227 - -
Stsc152095g00001 346 Pfam MYB-CC type transfactor, LHEQLE motif 257 299 IPR025756 -
Stsc152095g00001 346 FunFam Myb family transcription factor 168 226 - -
Stsc152095g00001 346 SUPERFAMILY Homeodomain-like 167 223 IPR009057 -
Stsc152095g00001 346 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152095g00001 Stsc-Chr152095 9356 13478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152095g00001 20 302 G2-like Transcription Factor Family AT4G28610 49.671 5.65e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc152095g00001 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152095g00001 - - adu:107465812 558.525